Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120855g00050 ATGGTGGCCATTGGCATTGTGGCCACAGTGCTGGTGCTGGTGCTGGTGGCGGTGTTTCCACTGGGAAAGGCAGATCTGGCATCGGAGCGGGCGGCATTGCTGGCTCTACGGTCCTCCGTCGGTGGCAGGACCCTTTTCTGGAACGCCACGAGCCAGAGCCCCTGCAACTGGGCTGGCGTGCAATGCGAACAGGGTCAGGTGGTAGAGCTGCACCTGCCCGCCGTGGCACTCTCCGGGCGCATTCCAGCGGGAATATTTGGAAACCTGACACATCTGCGCACCCTGAGCCTGCGGTTCAACGCGCTGACGGGTCCCCTCCCTGCAGATCTGGCATCGTGCATTAACCTCCGGAACCTGTACCTGCAGCGCAATCTGCTGTCGGGCGAAATCCCGGAGTTTCTGTTCCGGCTGCCGGACCTGGTCCGCCTGAACCTGGGCTTCAACAATTTCTCGGGTGGGGTCCCACCGGAGTTCAACAGGTTGAGTAGACTTAGAACTCTTTACCTCCAAAACAATCAGCTCTCCGGTCCCATCCCGCAGCTCAGCCTGCCGGACCTCGAACAGTTCAACGTCTCCAACAACTTCCTCAACGGCTCTGTCCCCAACAAGCTCCAGAAATTCCCCCAAGATTCCTTTCTTGGCAACTCCCTCTGCGGCCGCCCCCTCACGCTCTGCCCCGGCGAAGATGCATCTGCTTCCGGCGACATTCCCAATAACAAGACCAAGAAGAAAAACAAGTTGTCTGGCGGTGCCATTGCTGGAATCGTCATCGGATCCGTGGTGTGTCTTCTGCTGCTCGTATTCGCACTGATCCTTTTGTGTAGGAACAAGAGCGCCAAGAAGACCAGTGCCGTTGAAGTCGCAACCGTCAAGAACCCGGAGCCCGAACTTCCAGGCGACAAGCCAGTGGAAGACGTGGAGAACGGGCCGGGGCCCCACAGTAATGGCGCTCCCGATAATGGGTACACGGTGGCTGCAGCAGCTGCCGCAGCTATGGCGGCAGGGAACGGGAGCAAGGCCGAGGCCAACGGCGGTGGTGGTAGTGGAGCCAAGAAGCTGGTGTTTTTTGGGAATACGGCAACAGCGGGGGCGGCGAGGCCATTTGATCTGGAGGATTTACTTCGGGCTTCGGCGGAGGTATTGGGGAAAGGGACGTTTGGTACGGCATACAAGGCGGTTTTGGAGGCAGGACCGGTGGTGGCTGTGAAGAGGTTGAAGGATGTGACTATTTCCGAGAAGGAGTTCAAGGAGAAGATCGAGTCCGTGGGAGCAATGGATCACGAGAACTTGGTTCCGCTGAGGGCTTACTATTTCAGCAGAGATGAGAAGCTCCTTGTCTATGACTACATGTCCATCGGAAGCTTATCTGCTCTTTTGCATGGAAACAAAGGAGCGGGGAGGACACCGTTAAACTGGGAAATCAGATCAGGCATTGCACTTGGAGCTGCTCGAGGGATTGAGTACCTTCACTCACAGGGAACCAATGTTTCTCATGGAAACATTAAGTCCTCTAATATCCTCTTAACCAAGTCCTACGATGCTAGAGTATCTGACTTCGGCCTAGCCCACCTTGTTGGCCCCTCATCCACCCCTAACCGAGTGGCCAGCTACCGCGCCCCCGAGGTCACCGATCCTCGCAAAGTATCCCAGAAGGCAGATGTGTACAGCTTTGGCGTGTTGCTCTTGGAGCTACTGACCGGCAAGGCACCCACCCATGCTCTCCTAAACGAGGAAGGAGTAGACCTCCCTAGATGGGTCCAATCCGTTGTCAGAGAAGAGTGGACTTCGGAGGTGTTTGATCTTGAGCTGCTGAGGTACCAGAATGTTGAAGAGGATATGGTTCAGTTGTTGCAGCTTGCAGTTGATTGCGCAGCACCGTACCCTGATAAGCGCCCTTCCATGTCCCAAGTGGCACAAAGCATTGAAGAATTGCGCCGCTCCAGCTTTAAAGAGGAACAGGACCAAATCCGAACCCAACAACATGATCTTGTAGAGTTATAG 2001 0.5587 MVAIGIVATVLVLVLVAVFPLGKADLASERAALLALRSSVGGRTLFWNATSQSPCNWAGVQCEQGQVVELHLPAVALSGRIPAGIFGNLTHLRTLSLRFNALTGPLPADLASCINLRNLYLQRNLLSGEIPEFLFRLPDLVRLNLGFNNFSGGVPPEFNRLSRLRTLYLQNNQLSGPIPQLSLPDLEQFNVSNNFLNGSVPNKLQKFPQDSFLGNSLCGRPLTLCPGEDASASGDIPNNKTKKKNKLSGGAIAGIVIGSVVCLLLLVFALILLCRNKSAKKTSAVEVATVKNPEPELPGDKPVEDVENGPGPHSNGAPDNGYTVAAAAAAAMAAGNGSKAEANGGGGSGAKKLVFFGNTATAGAARPFDLEDLLRASAEVLGKGTFGTAYKAVLEAGPVVAVKRLKDVTISEKEFKEKIESVGAMDHENLVPLRAYYFSRDEKLLVYDYMSIGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGTNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVASYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEDMVQLLQLAVDCAAPYPDKRPSMSQVAQSIEELRRSSFKEEQDQIRTQQHDLVEL 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120855g00050 666 SUPERFAMILY Protein kinase-like (PK-like) 379 641 IPR011009 -
Stsc120855g00050 666 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
Stsc120855g00050 666 ProSiteProfiles Protein kinase domain profile. 375 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120855g00050 666 FunFam pollen receptor-like kinase 1 339 449 - -
Stsc120855g00050 666 CDD STKc_IRAK 381 644 - -
Stsc120855g00050 666 PANTHER OS05G0588300 PROTEIN 8 650 - -
Stsc120855g00050 666 SUPERFAMILY L domain-like 45 207 - -
Stsc120855g00050 666 FunFam Probable inactive receptor kinase At1g48480 450 653 - -
Stsc120855g00050 666 Gene3D Phosphorylase Kinase; domain 1 359 449 - -
Stsc120855g00050 666 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Stsc120855g00050 666 Gene3D Ribonuclease Inhibitor 28 138 IPR032675 -
Stsc120855g00050 666 FunFam Probable inactive receptor kinase RLK902 26 164 - -
Stsc120855g00050 666 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Stsc120855g00050 666 MobiDBLite consensus disorder prediction 291 317 - -
Stsc120855g00050 666 Gene3D Transferase(Phosphotransferase) domain 1 450 665 - -
Stsc120855g00050 666 Pfam Protein kinase domain 378 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120855g00050 666 Gene3D Ribonuclease Inhibitor 141 225 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120855g00050 Stsc-Chr120855 218169 221118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120855g00050 25 645 Receptor kinase-like Gene Family AT1G48480 64.669 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc120855g00050 Pkinase 1.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120855g00050 - - gmx:100818955 953.355