Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120855g00038 ATGGGGCTTCTAAGGATTCACATCAAGCGTGGCGTGAATCTGGCAGTTCGTGATGTGAATACCAGTGACCCTTATTGCGTGGTTAGGATGGGGAAACAGAAACTGAAAACACGTGTAATAAAAAAGGATGTTAATCCGGAGTGGAATGAAGAGCTTACACTTTCCGTACAAGATCCGAATGTTCCGTTCACGCTGACTGTGTATGACCACGACACGTTCACGAAAGACGACCCCATGGGGGATGCAGAGTGTGACATAAACCCCTTCATAGAAGCCTTGAAGATGAGCACTGATGGCCTCCCAACGGGCACCATAATCAGCCGAATACAGCCTAGCAGGCAAAACTGCCTTGCTGAGGAGAGCCGTATTACTTGCATCGACGGCAAAGTTGTCCAAGACATTGTCCTCAGATTGCGACACGTCGAATGTGGTGAGGTTGAACTCCAATTGGAATGGATAGATATTCCTGGATCTCACGTATGA 483 0.4783 MGLLRIHIKRGVNLAVRDVNTSDPYCVVRMGKQKLKTRVIKKDVNPEWNEELTLSVQDPNVPFTLTVYDHDTFTKDDPMGDAECDINPFIEALKMSTDGLPTGTIISRIQPSRQNCLAEESRITCIDGKVVQDIVLRLRHVECGEVELQLEWIDIPGSHV 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120855g00038 160 CDD C2_ArfGAP 2 144 - -
Stsc120855g00038 160 Gene3D C2 domain 1 159 IPR035892 -
Stsc120855g00038 160 ProSiteProfiles C2 domain profile. 1 100 IPR000008 -
Stsc120855g00038 160 Pfam C2 domain 2 88 IPR000008 -
Stsc120855g00038 160 SMART C2_3c 3 98 IPR000008 -
Stsc120855g00038 160 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 158 IPR044562 -
Stsc120855g00038 160 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 141 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120855g00038 Stsc-Chr120855 168579 169061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120855g00038 34 157 C2H2 Transcription Factor Family AT1G70790 60.317 9.70e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120855g00038 - - gmx:100799469 260.381