Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120855g00010 ATGGATGGGGATGAAGATATCATGATGATGAGGCATCAGCAGCAGCATTCCCTCCAGAAAGTGCCGGGGGCAAAGCTCCGCCTCATGTGCAGCTACGGAGGCAACATCATGCCACGCCCGGACTCTCTCTCTCTCCACTACGTGGGTGGCGACACTCGCATGCTGGCTGTGGACCGCAACACCTCCTTCAAGGACCTCTCTGCTCGCCTCTCTAACACCCTTCTCCATGGACGTCCCTTCACCCTCAAGTACCAGCTCCCCGACCACCAACTTGACAACCTCATCACCGTCGCCTCCGATGACGACTTCCAAAACATGATCCAAGAGTACGACCGCTTCGCTTCTTTGTCTCCTCCCCTGCGCCTCAGGCTCTTCCTCTTCCTCTCCAAACTTGACACCGCCGCTTCCATGGGTGCACTCCTCAATGATGCCAAGTCTGAGACGTGGTTCGTGGACGCTCTCAACAACTCCGGGGTGATGAATAATATATCCCGTGTTGTTTCTGATTCTGCTGCTGTTGATGAATGCCTCCTCAGCCTTGCTGATGAACTCACCCCGGATCATGGTGAATGCCACGATGATGATGAAGGTGGATGCAGTAATAATAAGCCCCCTCCCCCTCCTACTTTTGCTGCTTATGGTTTGCCATCTCCTGATTCTGTTGCAAGTGATAGCAGCATTGCAAGTTCAATCTCAAAGGGGGTTTACTATCAAGAACAACAAGTCCAAGTAGAAAGCAGACCTCCTCTTTCCTCAAACATGAGCATCAACACCACTACTCCAGATCACACCCTGCAAGTGGATCCAAATCAGCAACAGCAGCAGCAATTTGTGTACATCCAGCCACACCCTCATGTTGCTGCATCCACCACTGGACAAGTGCCAATATCATCTTACCACCACACACTTTATGCACCACAATCAAATCAACAGCATTACCCAGTTTATGTAATGCCAGTTGACATTTCACAAGTGCCCACTAATTATCCCACTATGCTAACTACCCCAACCAATATACCTGACACTACTCATCCTGCATTTCTTCACCAACAACGCTATGTGCCTTTGCCTCATCATCATCCAATTCCAGTAGCCACACCTAAGCAAGACCAGCAACTACTATATTACATACAAACACAAACACAGCAGCACCAATCCATCAGTGCTCCACAGACCCTTCAGTACCAATCCATGACCCCAGCAGCAGCTGCAATCTCCCATGTTTCCAAAGACTTCCCTCTCTGA 1245 0.5004 MDGDEDIMMMRHQQQHSLQKVPGAKLRLMCSYGGNIMPRPDSLSLHYVGGDTRMLAVDRNTSFKDLSARLSNTLLHGRPFTLKYQLPDHQLDNLITVASDDDFQNMIQEYDRFASLSPPLRLRLFLFLSKLDTAASMGALLNDAKSETWFVDALNNSGVMNNISRVVSDSAAVDECLLSLADELTPDHGECHDDDEGGCSNNKPPPPPTFAAYGLPSPDSVASDSSIASSISKGVYYQEQQVQVESRPPLSSNMSINTTTPDHTLQVDPNQQQQQQFVYIQPHPHVAASTTGQVPISSYHHTLYAPQSNQQHYPVYVMPVDISQVPTNYPTMLTTPTNIPDTTHPAFLHQQRYVPLPHHHPIPVATPKQDQQLLYYIQTQTQQHQSISAPQTLQYQSMTPAAAAISHVSKDFPL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120855g00010 414 Gene3D - 46 128 - -
Stsc120855g00010 414 MobiDBLite consensus disorder prediction 187 209 - -
Stsc120855g00010 414 PANTHER OS05G0427100 PROTEIN-RELATED 22 375 - -
Stsc120855g00010 414 SMART PB1_new 40 127 IPR000270 GO:0005515
Stsc120855g00010 414 Pfam PB1 domain 43 127 IPR000270 GO:0005515
Stsc120855g00010 414 SUPERFAMILY CAD & PB1 domains 45 137 - -
Stsc120855g00010 414 CDD PB1_UP2 29 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120855g00010 Stsc-Chr120855 48186 49624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120855g00010 24 155 MAP Kinase Kinase Kinase AT1G79570 38.346 5.87e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120855g00010 - - ahf:112783394 409.068