Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120855g00008 ATGCGTGTTGTTACAACTACAACAGAGACAGCAACAACAGTTACAGTTGCAGAACAACACATGAAATGGAGAAGACCCAGAAACCACCGCATGATCACAGAAGAAACAGATCCAAGCCCGCCAAGGTGCAAGTCCACCATTTCGTCTCTGCTCCTCTCCACATTCTCCAACAACAACAATGATGGCGGTTCTCAGAGCAGGAAAAAAAGCAACTTTTCAGCAGCGGCCACCTTCAGGGGACTGGGGTGCACGGCGGTGATCCGAAGTTCGGCGGAATGGGAAGGCAAGAAGGTGAGAAAGAAGAAGCACAAGAGGAGCAGCAAAGGAGGAGGAGGAGGAGGTGTGGATTTTGAAGATGTATGGTGTGGCGCCCCACTCTCTTGTTGTTCTTCTTCAAGACCCAAAATTGATGTTCAGAAGATGAATGAGAGAGAGAGACAGCGTTCATCTTCTTGTTTGGGAAGGCGGAGTGTCAACCCAGAAACCATCTCGCTTCTCGACCACACCCATCCTACTGATGCATACTATCCTCATCAGATTATGATGCTTCAAGAAGGTGCTAGTATGCTCATGGGGGCCAGAGGCAGATTAACCACACACGATCAATTCAGAGATTGGAGGCTTGATGTTGATAACATGTCCTATGAGCAATTGCTTGAGCTCGGCGACAGAATTGGTCATGTCAGCACTGGCCTTAAAGAAAATGAGATGGCTGCCAACATAACCAAGACTAAGCTTCAAGTTTCAGATGATCAAGTAGACAAAACATGTACCATTTGCCAGGAGGAGTATGAAGCAGAGGACCAATTGGGGAGCTTACATTGTGACCACACCTATCACTTCCAATGTATAAAACAATGGGTTGCTCATAAGAACTTCTGTCCTGTCTGTAAGCAACAAGTTCTGCCTCGCAACAACTGA 921 0.4701 MRVVTTTTETATTVTVAEQHMKWRRPRNHRMITEETDPSPPRCKSTISSLLLSTFSNNNNDGGSQSRKKSNFSAAATFRGLGCTAVIRSSAEWEGKKVRKKKHKRSSKGGGGGGVDFEDVWCGAPLSCCSSSRPKIDVQKMNERERQRSSSCLGRRSVNPETISLLDHTHPTDAYYPHQIMMLQEGASMLMGARGRLTTHDQFRDWRLDVDNMSYEQLLELGDRIGHVSTGLKENEMAANITKTKLQVSDDQVDKTCTICQEEYEAEDQLGSLHCDHTYHFQCIKQWVAHKNFCPVCKQQVLPRNN 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120855g00008 306 ProSiteProfiles Zinc finger RING-type profile. 257 298 IPR001841 -
Stsc120855g00008 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 303 IPR013083 -
Stsc120855g00008 306 SMART ring_2 257 297 IPR001841 -
Stsc120855g00008 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 21 302 IPR045191 GO:0061630
Stsc120855g00008 306 SUPERFAMILY RING/U-box 249 303 - -
Stsc120855g00008 306 Pfam Ring finger domain 256 298 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120855g00008 Stsc-Chr120855 42604 44455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120855g00008 194 302 C3H Transcription Factor Family AT2G15530 49.565 2.53e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120855g00008 - - gmx:100788837 299.671