Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120855g00007 ATGGGTAAGAAGAAGAAGAGGGTTTCGTCCAAGGTATGGTGCTATTATTGCGATCGGGAGTTCGACGATGAGAAGATCTTGGTGCAGCATCAGAAGGCGAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTCTCCACCGCCGGTGGTATGGCCATCCACGTCCTCCAGGTCCACAAGGAATCCGTCACCAAGGTCCCGAATGCCAAACCTGGTAGAGAGAGTACAGATATTGAAATATATGGAATGCAAGGGATTCCACCCGATGTTTTGGCTGCTCATTATGGAGAAGAAGACGATGATGTTCCATCAAAGGCAGCAAAGGTGGACATACCATCAACACAGCTTGTAGGTGGAATGGTGCCACCTCCTTTGGGTACAGCATACCCTCCTCGACCAGCGATACCACCCATGTATAATCCAGCCGTGCCTGTCCCCCCAAATGCTTGGGCTGTTCCACCTCGACCTGCTCAGCCATGGTATCCCCAACCTCCCGCTGTTTCAGTTCCGCCTCCTGCCCCTTACACACAACAGCCGTTATTCCCGGTGCAGAACGTGAGACCGCCATTGCCCTCAACTGCTCCTCCTCCTCCACTCCAAACTCAGTGCTCCATCCATAAATCCAGTCCTATCCTCAAGTGCCCCTGTTGA 651 0.5269 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEEDDDVPSKAAKVDIPSTQLVGGMVPPPLGTAYPPRPAIPPMYNPAVPVPPNAWAVPPRPAQPWYPQPPAVSVPPPAPYTQQPLFPVQNVRPPLPSTAPPPPLQTQCSIHKSSPILKCPC 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120855g00007 216 MobiDBLite consensus disorder prediction 171 204 - -
Stsc120855g00007 216 MobiDBLite consensus disorder prediction 171 198 - -
Stsc120855g00007 216 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Stsc120855g00007 216 PANTHER ZINC FINGER PROTEIN 207 1 205 - -
Stsc120855g00007 216 SMART c2h2final6 12 35 IPR013087 -
Stsc120855g00007 216 SMART c2h2final6 36 59 IPR013087 -
Stsc120855g00007 216 Gene3D Classic Zinc Finger 1 66 - -
Stsc120855g00007 216 CDD SUF4-like 13 92 - -
Stsc120855g00007 216 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Stsc120855g00007 216 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120855g00007 Stsc-Chr120855 38625 40148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120855g00007 1 195 C2H2 Transcription Factor Family AT1G30970 69.756 7.53e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc120855g00007 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120855g00007 - - gmx:100819009 322.013