Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120855g00005 ATGGGGCTTGGGTTGAAGATGAAGATTCAGGAGATGCAGCAGAAGCACCATGTACCTGTGGCTTTGAGGATGCATGACCAAAATGGGACTCAAAAGAGAAAATACACTTTCATTCAAAAGAACAGGGCTTTGATTCCACTCTTTCTCTTTGTTTGGATCCTTGTCATGTCTTACTTTAGCTGGTTTGTCTTCAACAAAATGGATGCTGACGACAAGGTTAGGAGGAAGGAGTTTCTTGAAACCCAGTGCGACCAAAGGGCAAGAATGCTGCAAGATCAATTTAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGACACCCTTCTGCCATTGATCAGGGAACCTTTGCGGAATACACGGCGAGGACAGCATTTGAAAGGCCATTGTTGAGTGGGGTGGCTTATGCACAGAGAGTGGTACACTCTGAGAGGGAAACATTTGAGAAGCAACATGGATGGATCATTAAGACAATGGAAAGAGAGCCCTCACAGCTCAGAGATGAGTATGCACCTGTCATCTTTGCCCAGGAAACCGTTTCCTACCTTGAATCTATTGATATGATGTCTGGCAAGGAGGACAGAGAAAATATTTTGAGGGCGAGGGCCACTGGGAAAGCTGTTCTCACAAGCCCTTTTAGGCTGTTAGGGTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTACAAATCTAAGCTTCCTCTAAATCCAACACTGGAAGAACGCATTAAAGCAACGGCAGGATATGTGGGAGGATCCTTTGATGTTGAGTCCCTTGTAGAGAATTTACTGGGTCAACTTGCTGGTAACCAAGCAATTTTGGTGAATGTATATGATGTGACAAACTCTTCTACCCCCCTGATTATGTATGGGAGCCAATATGAAAAAGGTGACATGTCACTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCCTACAGGAATCACACAATGATATGTAGGTATCATCAGAAGGCACCAACAAATTGGATGGCACTTACCACAGTATCCCTAGTCTTTGTGATCCTCTTATTAATTGGTTACATTTTGTACGGTGCCGGAAATCATATCGTCAAAGTAGAGGACGATTTCCAGGAAATGGAGGAACTGAAAGTGCGTGCTGAAGCAGCCGATGTTGCCAAGTCACAGTTTCTAGCTACTGTGTCGCATGAAATTAGAACTCCCATGAATGGAATTTTAGGAATGCTTGGTCTGCTTCTAGATACAGAGTTGACTTCAACCCAGAGAGATTATGCTCAGACAGCTCAAGCATGTGGAAAGGCACTGATAACATTAATAAATGAGGTGCTTGACCGTGCTAAAATTGAAGCTGGCAAGTTAGAGCTAGAAGCAGTTCCATTTGACATCCGTTCCATTCTTGATGACGTCCTTTCACTTTTTTCTGAGAAGTCTAGGCATAAAGGTTTAGAGTTGGCAGTGTTTGTCTCTGATAAAGTTCCGGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAATAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAACGTGGACATATATTTGTCAAAGTCCATCTAGCCGAAAGTACAAAGCCGACGACGAATGGAACTTGTGAGACTTATCTAAATGGAGTAACAGATGAAGTTGGGCATATATCTGGTGGTTGTAATTCGAAAACCCTGAGTGGGTGTGAAGCAGCCGATGAACGGAACAACTGGGAGAACTTCAAGCATCTAATTGCTGATGAGGAATTTTTGTCTGATTCTGTCAAGAAGGTGGCCTGCAGTGAAGCTTATGACCAAGTTAGATTAATGGTGTGTGTGGAGGACACTGGAATTGGAATTCCTTTCTCGGCCCAGGATAGGATTTTCATGCCTTTTGTGCAGGCAGATAGCTCGACATCGCGACACTATGGCGGTACTGGGATTGGCTTGAGTATCAGTAAGTGCCTGGTTGAACTAATGGGTGGTCAGATAAACTTCATAAGCCGACCCCAAGTTGGAAGTACATTTTCATTTACTGCAAACTTTGGAACGTACAAGAAAAACTTAAAAACAGATGTCAAGAAACTTAATGTGGAAGATCTGCCTTCTAGTTTTAGAGGGCTTAGAGCTATAGTGGTTGATGGAAAACCTGTTAGAGCTGCTGTCACAAGATATCATTTGAAGAGACTAGGTATTCAAGCTAAAGTTGCAAACCACATTAAGAAGGCTGTTTCGTTATGTGGCAAGAATGGTTCTTTGGCTTCAGAATTATTTCAGCCTGACATTGTTTTCGTGGAGAAGGACTCGTGGTTTTCTGGAGAGGATGGAGTTTTCAATATCTGGCAACTAGATTGGAAACAGAATGGTCATATGTTGAAGATACCCCAAATGATCCTTCTTGCAACCAATATTAGTAATGGCGAATTTGATAAAGCTAAAGCAACAGGTTTCAGCGACACGGTGATCATGAAGCCTCTGAGATCTAGTATGGTGGCTGCTTGTCTACAGCAGGTTCTGGGGATGGGAAAGAAGAAGCAGCTAGGAAAAGACATGCCAAATGCCCCAACTTTCCTAAAAAGCCTTCTTTGTGGAAAGAAAATGTTAGTGGTTGATGACAACATTGTAAACAGGAGGGTTGCTGCGGGTGCATTAAAGAAGTTTGGAGCTGATGTTAAGTGTGCAGAAAGTGGCAAAGCTGCTCTTGAAATGCTTCAGTTGCCTCACAATTTTGATGCATGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAGGCAACTCGTCGAATTCGAATGATGGAGAGCAAGGCGAACGAGCAAGAGATGAATGGTGAATGTGAAGAAGGAAAGAGGAGGAAAAGGAGTGAGCACCACTTGCCCATATTGGCTATGACAGCTGATGTAATCCATGCTACTTATGAAGAGTGCTTGAAATGTGGGATGGACGGATATGTCTCAAAGCCCTTTGAGGAAGAGAATCTCTATCAAGCAGTTGCAAAGTTTTTCAACTCAAACCATATCTCACCAGCTTCATGA 3042 0.4283 MGLGLKMKIQEMQQKHHVPVALRMHDQNGTQKRKYTFIQKNRALIPLFLFVWILVMSYFSWFVFNKMDADDKVRRKEFLETQCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRHPSAIDQGTFAEYTARTAFERPLLSGVAYAQRVVHSERETFEKQHGWIIKTMEREPSQLRDEYAPVIFAQETVSYLESIDMMSGKEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPLNPTLEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDVTNSSTPLIMYGSQYEKGDMSLVHESKLDFGDPYRNHTMICRYHQKAPTNWMALTTVSLVFVILLLIGYILYGAGNHIVKVEDDFQEMEELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLDTELTSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAESTKPTTNGTCETYLNGVTDEVGHISGGCNSKTLSGCEAADERNNWENFKHLIADEEFLSDSVKKVACSEAYDQVRLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTANFGTYKKNLKTDVKKLNVEDLPSSFRGLRAIVVDGKPVRAAVTRYHLKRLGIQAKVANHIKKAVSLCGKNGSLASELFQPDIVFVEKDSWFSGEDGVFNIWQLDWKQNGHMLKIPQMILLATNISNGEFDKAKATGFSDTVIMKPLRSSMVAACLQQVLGMGKKKQLGKDMPNAPTFLKSLLCGKKMLVVDDNIVNRRVAAGALKKFGADVKCAESGKAALEMLQLPHNFDACFMDIQMPEMDGFEATRRIRMMESKANEQEMNGECEEGKRRKRSEHHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFNSNHISPAS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120855g00005 1013 CDD REC_hyHK_CKI1_RcsC-like 869 1000 - -
Stsc120855g00005 1013 SMART CHASE_2 116 301 IPR006189 -
Stsc120855g00005 1013 Gene3D - 363 452 - -
Stsc120855g00005 1013 Gene3D - 704 844 - -
Stsc120855g00005 1013 Gene3D - 861 1010 - -
Stsc120855g00005 1013 Pfam CHASE domain 119 299 IPR006189 -
Stsc120855g00005 1013 Pfam Response regulator receiver domain 869 936 IPR001789 GO:0000160
Stsc120855g00005 1013 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 443 680 IPR036890 -
Stsc120855g00005 1013 ProSiteProfiles Response regulatory domain profile. 710 840 IPR001789 GO:0000160
Stsc120855g00005 1013 Gene3D - 453 688 IPR036890 -
Stsc120855g00005 1013 SMART REC_2 866 1000 IPR001789 GO:0000160
Stsc120855g00005 1013 FunFam Histidine kinase 3 861 1008 - -
Stsc120855g00005 1013 PANTHER TWO-COMPONENT HISTIDINE KINASE 25 1001 - -
Stsc120855g00005 1013 ProSiteProfiles Response regulatory domain profile. 867 1004 IPR001789 GO:0000160
Stsc120855g00005 1013 CDD HATPase_EvgS-ArcB-TorS-like 506 683 - -
Stsc120855g00005 1013 CDD HisKA 389 450 IPR003661 GO:0000155|GO:0007165
Stsc120855g00005 1013 Gene3D - 67 119 - -
Stsc120855g00005 1013 SMART HisKA_10 389 454 IPR003661 GO:0000155|GO:0007165
Stsc120855g00005 1013 Pfam His Kinase A (phospho-acceptor) domain 389 454 IPR003661 GO:0000155|GO:0007165
Stsc120855g00005 1013 PRINTS Bacterial sensor protein C-terminal signature 669 682 IPR004358 GO:0016310|GO:0016772
Stsc120855g00005 1013 PRINTS Bacterial sensor protein C-terminal signature 610 624 IPR004358 GO:0016310|GO:0016772
Stsc120855g00005 1013 PRINTS Bacterial sensor protein C-terminal signature 628 638 IPR004358 GO:0016310|GO:0016772
Stsc120855g00005 1013 PRINTS Bacterial sensor protein C-terminal signature 645 663 IPR004358 GO:0016310|GO:0016772
Stsc120855g00005 1013 Coils Coil 366 386 - -
Stsc120855g00005 1013 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 501 682 IPR003594 -
Stsc120855g00005 1013 ProSiteProfiles Histidine kinase domain profile. 396 685 IPR005467 -
Stsc120855g00005 1013 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 375 455 IPR036097 GO:0000155|GO:0007165
Stsc120855g00005 1013 Gene3D CHASE domain 120 335 IPR042240 -
Stsc120855g00005 1013 FunFam Histidine kinase 4 361 452 - -
Stsc120855g00005 1013 FunFam Histidine kinase 4 120 335 - -
Stsc120855g00005 1013 SMART HKATPase_4 501 685 IPR003594 -
Stsc120855g00005 1013 SUPERFAMILY CheY-like 705 841 IPR011006 -
Stsc120855g00005 1013 ProSiteProfiles CHASE domain profile. 116 328 IPR006189 -
Stsc120855g00005 1013 SUPERFAMILY CheY-like 865 1005 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120855g00005 Stsc-Chr120855 20542 25233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120855g00005 32 1013 Histidine Kinase Gene Family AT2G01830 69.767 0.0 1379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc120855g00005 HATPase_c 6.7e-31 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120855g00005 K14489 - gmx:100818481 1642.09