Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120855g00003 ATGCACAAACCTGGGGAATTCACGACTTTTCGTGCTCATTGGATCCATATCAATATCAATATCATCATACCGCTACTTCTTCTTACGCTCCCATCATCATGTCGGTGTCAGAGCGATGGAGATGTGATTCGCATGCTCAAAACCACCATCAACGCTCCCGTCACCTTTCAATGGACGGATCCTGACGTATGCAAATGGAGGCGGATTACATGTGATTCCTCAAAACGCGTCATTGCCATACAAATCGGAAACCAGAATCTTCAAGGCACTCTCCCAAAGGACCTTGACAAGCTCTCTGCATTGCAAAACTTGGAGTGCCAAGGCAACAGTCTCACAGGACCATTCCCTTACCTTCCCAAATCCCTCCAGAAGCTCATCATTCATGACAACAAGTTCAACAGCATTCCCAGCGACATCTTCAAGGGTATGGGCAGCTTGCAGGAAGTGAACATGGACGACATCCCATTCCCTCCATGGCAGATTCCTCAAACCCTTGGTGACTGTGTTGCACTCCAAACTTTCACTGCTCAGAGAGTTGGCTTTGTTGGCACAATCCCTGACTTGTTTGGCAAGAATTTTCCAGGTTTGGTTTTCTTAGCCTTATCTGGTAATTCTCTTGAAGGTCCTTTGCCTCCAAGCCTTGCTACTTCTTCAATTGAGACTCTTTTGGTTAATGGTAACTCTAGACTCAATGGTACCATCTCTGTCTTGAAATCCATGACACCCCTTAAGCAATTTTGGGCTCATGGCAATGCATTTACGGGTCCTATACCAGACATGTCAAACCATAATCATCTCTCTGATATAAACTTGAGGGACAACCAGTTGACTGGTGTTGTTCCACCCTCACTTGCGGCCCTTCCGAGTTTGCGAGTTGTGAATTTAACAAACAATCTCTTTCAAGGCTCCCCTCCCATTTTCAGAAGTGGTGTTCAAGTTGATAATTACTTGGATAAAGGGAGAAACCAATACTGCACAACCACTCCTGGCCAACCATGCGCTACTCTTGTAAATGCTTTACTATCTACTATTGAGCCCTTGGGTTATCCTCTCATTTTTGCTAAGACTTGGTGGGGTAATGATCCTTGTGCTAATAAATGGCTTGGGATAATTTGCTCAGCTGGGAACATTTCAGTTGTTAACTTTCAAGGCATGGGTTTGTCAGGTGCTATTTCTCCTAGTTTTGTTACCCTTACATCTATCACAAAGTTAGTTCTTTCCAACAATAATATTACTAGTAAAATACCAACTGAACTTACCACTATGCCTCGTTTGCAAGAATTAGATGTTTCCAATAATAATTTATATGGTAATGTACCTAAATTTCGCGATGGTGTAGTTCTTAAATTAGAAGGAAATCCTGATATTGGAAAGGATAAACCCACTTCTTCTAGCTCAAATAATTCTCAAGATAACAGGAAGAAACCTGCTGACACTCTTCTTGGAGTTTTTCTGGGGGTTCTTATCATCCTAGTTATAGGGTTTCTAATATATAAGTTTAAGTTCTTCAAGAAACATAAGCATGCAAGGAAATTTCAAAATCCAACGGCAATTGTGATACACCCTAGTCATTCTGGTGATGGAAATGCCTTATTAAAGATGACTATGGCGGGTGTTGGTGTTCATGGTGGAGGAGCAGAAGCATTCAGTCCTGGTAATGTTTATCAAGCTGAATCCGGTAATCTTTTGATCTCAATTGATGTTTTGAAAGTAGTCACTAATAATTTTAGTGAAAAAAACGTGCTGGGTAGAGGTGGCTTTGGCACTGTATACAAAGGGGAATTGCATGATGGGACAAGAATTGCTGTTAAAAGGATGCAATCAGGAGTAGTGACAGAGAAAGGATTAGATGAGTTCATGGCCGAAATTGCAGTGCTCACAATTCGACATAGGAATTTGGTTGCACTCTTGGGGTATTGTTTGGATGAAAATGAGAGACTTCTTGTTTATGAATACATGCCTCAAGGTACTCTTAGTAGACATTTATTCCACTGGGAAGAGGAAGGGTTGAAACCACTTGAATGGAAGACAAGACTCATTATTGCTTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTAGCCCAACAGACTTTTATCCATAGGGATCTCAAACCATCAAATATTTTGCTTGGGGATGATATGAGAGCTAAAGTTGCTGACTTTGGATTAGTTCGCCTTGCTCCAGAAGGAAAAGCCTCATTTCAGACCAGACTTGCTGGAACTTTTGGATATTTAGCACCAGAGTATGCAGCCACGGGAAGACTTACAACAAAGGCTGATGTGTATAGTTTTGGAGTAATTCTGATGGAACTCATAACTGGACGGAAAGCACTTGATGAAAGTAGACCAGAAGAGAATTTCCACCTAGTTTCATGGTTTCGAAGAATGCTACTGGACAAAGATTCATTTCGAACCATCATCGACTCAGCAATACAGGCTGATGAGGAAACCTTAAGTAGCATCAACACAGTTGCAGAGTTAGCAGGGCATTGCTGTGCGAGGGAGCCATACCAACGGCCGGACATGGGCCATGCAGTGAACGTGTTGTCGCCTCTTATTGAGGTGTGGAAGCCAACAGAACCAGATGCTGATGAAATATACGGGATCAACTTTGACATGACATTGCCGCAAGCACTTCAGAGGTGGAAGCAATTTGAAGAAAATAGCACCCTTGGCCTTGATGATTTTTCTTCCAATACTTCTCCTCCAACCACAAATTTAGTAAGTATCACAACTCCTCCATCATCTGCAAAGCCTGCTACATTCAGAACTTCATCAGATGGACGTTCAAGTTAG 2802 0.4215 MHKPGEFTTFRAHWIHININIIIPLLLLTLPSSCRCQSDGDVIRMLKTTINAPVTFQWTDPDVCKWRRITCDSSKRVIAIQIGNQNLQGTLPKDLDKLSALQNLECQGNSLTGPFPYLPKSLQKLIIHDNKFNSIPSDIFKGMGSLQEVNMDDIPFPPWQIPQTLGDCVALQTFTAQRVGFVGTIPDLFGKNFPGLVFLALSGNSLEGPLPPSLATSSIETLLVNGNSRLNGTISVLKSMTPLKQFWAHGNAFTGPIPDMSNHNHLSDINLRDNQLTGVVPPSLAALPSLRVVNLTNNLFQGSPPIFRSGVQVDNYLDKGRNQYCTTTPGQPCATLVNALLSTIEPLGYPLIFAKTWWGNDPCANKWLGIICSAGNISVVNFQGMGLSGAISPSFVTLTSITKLVLSNNNITSKIPTELTTMPRLQELDVSNNNLYGNVPKFRDGVVLKLEGNPDIGKDKPTSSSSNNSQDNRKKPADTLLGVFLGVLIILVIGFLIYKFKFFKKHKHARKFQNPTAIVIHPSHSGDGNALLKMTMAGVGVHGGGAEAFSPGNVYQAESGNLLISIDVLKVVTNNFSEKNVLGRGGFGTVYKGELHDGTRIAVKRMQSGVVTEKGLDEFMAEIAVLTIRHRNLVALLGYCLDENERLLVYEYMPQGTLSRHLFHWEEEGLKPLEWKTRLIIALDVARGVEYLHGLAQQTFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASFQTRLAGTFGYLAPEYAATGRLTTKADVYSFGVILMELITGRKALDESRPEENFHLVSWFRRMLLDKDSFRTIIDSAIQADEETLSSINTVAELAGHCCAREPYQRPDMGHAVNVLSPLIEVWKPTEPDADEIYGINFDMTLPQALQRWKQFEENSTLGLDDFSSNTSPPTTNLVSITTPPSSAKPATFRTSSDGRSS 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120855g00003 933 FunFam Leucine-rich repeat receptor-like kinase 335 459 - -
Stsc120855g00003 933 ProSitePatterns Protein kinases ATP-binding region signature. 582 604 IPR017441 GO:0005524
Stsc120855g00003 933 Pfam Leucine rich repeat 394 435 IPR001611 GO:0005515
Stsc120855g00003 933 SMART serkin_6 576 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120855g00003 933 Pfam Leucine rich repeat N-terminal domain 37 72 IPR013210 -
Stsc120855g00003 933 Pfam Leucine rich repeat N-terminal domain 355 373 IPR013210 -
Stsc120855g00003 933 FunFam Receptor-like kinase TMK4 37 330 - -
Stsc120855g00003 933 PANTHER OSJNBA0070M12.3 PROTEIN 25 907 - -
Stsc120855g00003 933 MobiDBLite consensus disorder prediction 458 473 - -
Stsc120855g00003 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Stsc120855g00003 933 Gene3D Transferase(Phosphotransferase) domain 1 653 867 - -
Stsc120855g00003 933 Gene3D Phosphorylase Kinase; domain 1 547 652 - -
Stsc120855g00003 933 SUPERFAMILY L domain-like 61 442 - -
Stsc120855g00003 933 Gene3D Ribonuclease Inhibitor 335 460 IPR032675 -
Stsc120855g00003 933 ProSiteProfiles Protein kinase domain profile. 576 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120855g00003 933 MobiDBLite consensus disorder prediction 894 933 - -
Stsc120855g00003 933 CDD STKc_IRAK 582 854 - -
Stsc120855g00003 933 SMART LRR_typ_2 287 309 IPR003591 -
Stsc120855g00003 933 SMART LRR_typ_2 398 422 IPR003591 -
Stsc120855g00003 933 SMART LRR_typ_2 118 142 IPR003591 -
Stsc120855g00003 933 SUPERFAMILY Protein kinase-like (PK-like) 555 851 IPR011009 -
Stsc120855g00003 933 FunFam receptor-like protein kinase FERONIA 548 652 - -
Stsc120855g00003 933 MobiDBLite consensus disorder prediction 452 473 - -
Stsc120855g00003 933 Pfam Protein kinase domain 577 849 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120855g00003 933 FunFam receptor protein kinase TMK1 653 870 - -
Stsc120855g00003 933 Gene3D Ribonuclease Inhibitor 36 331 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120855g00003 Stsc-Chr120855 6489 9367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120855g00003 77 857 Receptor kinase-like Gene Family AT5G07280 31.018 1.04e-83 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc120855g00003 Pkinase 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120855g00003 K00924 - gmx:100788903 1186.4