Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120854g00023 ATGGATCGAAGCGGTGGAATTGCGACTGGGCCGCGCGATGTTGTAGGAGTTAGGAACGGTTCCGACATTGCGTGTAAACCCTTAAAGAATTTGAATGGTAAAATCTGTCAGATATGTGGTGATACTATTGGATTAACAGCCACTGGCGATGTCTTTGTTGCTTGCAAAGAATGTTCCTTCCCACTTTGTCACCGTTGCTATGAATGTGAGTGCGAGAATGGGAGCCAATCTTGCCCCCAGTGCAAGACCAGATACAATAGTCACAAAGATAGTTCCCATTTGGAGGGAGATGATGATGACGATGATGATGAAGACGATGATGTTGATGATTTAGAGAATGAGGTAAATTATGGAGAAAGAAATATTAACAAAGCAGGGATGCAATGGGAAGAAGATGCCGACCTCTCTTCTTCGTCAGGACATGATTCTCGGATGGCAAATTCAAATCCACATATCACAAATGGGCAGCCGCTATCTGGTGAAAAACCGTGTGCTACCCCTGATAAAAAATCTGTTCAAGCTACATCTGGTCCTTTGGGTCCATCCAGGGCGCAATCACTTCCCTACACTGATCCAAAGCAGCCAGGTCCTGAGAGTGATGAAGAGGTCAGAAGAGTGCCTGAGATAGGAGGTGAATCTGCTGGACCTTCAGCTTCCCGTCCAGGCACCGGTCCAACTGGTGGGCAAGAACGTGGTCAGGGGACTGGGGATGGCCAACGTAAGAGAGGCAGAAGCCCAGCAGACAAAGAAAACAAACGGCTAAAGAGGCTACTCAGGAACAGAGTGTCAGCTCAACAAGCAAGGGAGAGGAAGAAGGCGTATTTGATCGATTTGGAAACCAGAGTCAAAGACTTGGAGAAGAAAAACTCAGAGCTCAAAGAGAGACTTTCCACTTTGCAGAATGAGAATCAAATGCTAAGACAAATATTGAAGAACACAACAGCTAGCAGGAGAGGGAGCAACAGTGGTACAAATGCTGAATGA 984 0.4644 MDRSGGIATGPRDVVGVRNGSDIACKPLKNLNGKICQICGDTIGLTATGDVFVACKECSFPLCHRCYECECENGSQSCPQCKTRYNSHKDSSHLEGDDDDDDDEDDDVDDLENEVNYGERNINKAGMQWEEDADLSSSSGHDSRMANSNPHITNGQPLSGEKPCATPDKKSVQATSGPLGPSRAQSLPYTDPKQPGPESDEEVRRVPEIGGESAGPSASRPGTGPTGGQERGQGTGDGQRKRGRSPADKENKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNAE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120854g00023 327 Gene3D Single helix bin 271 312 - -
Stsc120854g00023 327 Pfam bZIP transcription factor 249 310 IPR004827 GO:0003700|GO:0006355
Stsc120854g00023 327 SMART brlzneu 248 312 IPR004827 GO:0003700|GO:0006355
Stsc120854g00023 327 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 250 313 IPR004827 GO:0003700|GO:0006355
Stsc120854g00023 327 Pfam Zinc-binding RING-finger 26 102 IPR027934 -
Stsc120854g00023 327 MobiDBLite consensus disorder prediction 235 272 - -
Stsc120854g00023 327 MobiDBLite consensus disorder prediction 86 272 - -
Stsc120854g00023 327 SUPERFAMILY RING/U-box 22 104 - -
Stsc120854g00023 327 Coils Coil 247 316 - -
Stsc120854g00023 327 ProSiteProfiles Zinc finger RING-type profile. 36 82 IPR001841 -
Stsc120854g00023 327 CDD bZIP_HY5-like 253 304 - -
Stsc120854g00023 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 110 IPR013083 -
Stsc120854g00023 327 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 170 324 IPR044280 GO:0000981|GO:0045944
Stsc120854g00023 327 MobiDBLite consensus disorder prediction 96 113 - -
Stsc120854g00023 327 SUPERFAMILY Leucine zipper domain 252 310 IPR046347 GO:0003700|GO:0006355
Stsc120854g00023 327 MobiDBLite consensus disorder prediction 169 189 - -
Stsc120854g00023 327 FunFam Transcription factor HY5 271 312 - -
Stsc120854g00023 327 MobiDBLite consensus disorder prediction 219 233 - -
Stsc120854g00023 327 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 255 270 IPR004827 GO:0003700|GO:0006355
Stsc120854g00023 327 MobiDBLite consensus disorder prediction 139 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120854g00023 Stsc-Chr120854 189793 193939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120854g00023 188 309 bZIP Transcription Factor Family AT5G11260 71.545 3.22e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc120854g00023 zf-UDP 3.1e-34 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120854g00023 K10999 - gmx:548004 462.996