Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120854g00021 ATGAACTTCAGAGTCTATGGTGATAACCCCACCAATAATGGTGATGGAATGGGTGGGAAGCCACCACCGGCAAATGTCACTCTGGTGAGGCAGCCTTCAGTTTATTCGCTTACTTTCGACGAGTTCCAGAACACATTGGGTGGGATTGGGAAGGATTTTGGATCCATGAACATGGATGAGCTCTTGAAGAATATATGGACTGCCGAGGAGTCTCAGGCGTTGGCGTTTTCTTCGCCCGGTATGACTGCCGGCATCAATGGTGGTGATCACAACAACCAAATTGGGAACTTGCAAAGACAAGGCTCTTTGACGCTTCCAAGGACTCTTAGTCAGAAAACAGTTGATGAGGTTTGGAGGGATTTGATGAAAGAGAACGGCAGCGGCAGCGGCAGCGGCGCTGGAGCCGGAGCCAAAGATGGAAGTAGCAATGGGGTTTCATCTGTGCCTCAAAATCAAGGGCAACAAGCATTGGGAGAAATGACATTGGAGGAGTTCTTGGTGAGAGCTGGTGTTGTGAGAGAAGATGCTCCTCAACAAGCTCAACAAATGGCAAGGTCCAATGCTAACAATAATGGCTGGTATGGTGGTGGTGACTTTGCTAGATCAAACAACAGCAACGGCTTACTTCTTGGTTTTCAACAACCAAATAGAAGTAATGGGAACAATCTTGCTAATAACTTGGTTCCCAAGCCTCCTCCTCCTCCGCTATCATTAAACTCCAATCATGCTCAGCAACAAGCACATCAGCCGNNNNNNNNNNCCCTTTTCCCGAAGCCTGCAAATGTGGCTTTTGCTTCTCCTATGCATATGTTGAACAATGCTCAGCTTGCTAGCCCTGGCACAAGGGGAGGGATGATTGGAATGCCGGAGCGTTCGATGAATGGCACGGTAGTTCAAAGCAATGGGCTGCCGAGTGTTGGAATCGTTGGTTTAGCCCCGGCCAATGTCACGGCCACGGGTGCTTCTCCTGCGAATAAATTGTCTCCGGATATGATTGCCAAGAGCGGTGTGGATACTTCTTCAATGTCGTTGTCACCGGTTCCGTATGTAATCAACAGGGGTAGGAAGTGCAGTGCTATAGAGAAAGTTGTTGAGAGGAGACAGAGGAGAATGATCAAAAATAGAGAATCAGCTGCAAGATCAAGGGCTCGCAAGCAGGCCTATACTTTTGAACTAGAAGCTGAAGTTCAGAAGCTTAAGGAAATAAACAAAGAATTACAAAAAAAGCAGGAAGAAATTATGGAAATGCAGAAAAATCAGAATATGGACTCTTCATTCAGGCCATTGGCAAATAAAAGACAGTGCTTGAGAAGGACACTTACAGGTCCATGGTAG 1335 0.4659 MNFRVYGDNPTNNGDGMGGKPPPANVTLVRQPSVYSLTFDEFQNTLGGIGKDFGSMNMDELLKNIWTAEESQALAFSSPGMTAGINGGDHNNQIGNLQRQGSLTLPRTLSQKTVDEVWRDLMKENGSGSGSGAGAGAKDGSSNGVSSVPQNQGQQALGEMTLEEFLVRAGVVREDAPQQAQQMARSNANNNGWYGGGDFARSNNSNGLLLGFQQPNRSNGNNLANNLVPKPPPPPLSLNSNHAQQQAHQPXXXXLFPKPANVAFASPMHMLNNAQLASPGTRGGMIGMPERSMNGTVVQSNGLPSVGIVGLAPANVTATGASPANKLSPDMIAKSGVDTSSMSLSPVPYVINRGRKCSAIEKVVERRQRRMIKNRESAARSRARKQAYTFELEAEVQKLKEINKELQKKQEEIMEMQKNQNMDSSFRPLANKRQCLRRTLTGPW 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120854g00021 444 MobiDBLite consensus disorder prediction 79 111 - -
Stsc120854g00021 444 Pfam bZIP transcription factor 366 419 IPR004827 GO:0003700|GO:0006355
Stsc120854g00021 444 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 369 384 IPR004827 GO:0003700|GO:0006355
Stsc120854g00021 444 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 364 415 IPR004827 GO:0003700|GO:0006355
Stsc120854g00021 444 MobiDBLite consensus disorder prediction 176 241 - -
Stsc120854g00021 444 MobiDBLite consensus disorder prediction 140 158 - -
Stsc120854g00021 444 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 29 444 IPR043452 GO:0003700|GO:0045893
Stsc120854g00021 444 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 364 421 - -
Stsc120854g00021 444 MobiDBLite consensus disorder prediction 179 226 - -
Stsc120854g00021 444 Coils Coil 389 419 - -
Stsc120854g00021 444 Gene3D - 364 421 - -
Stsc120854g00021 444 MobiDBLite consensus disorder prediction 1 26 - -
Stsc120854g00021 444 MobiDBLite consensus disorder prediction 79 159 - -
Stsc120854g00021 444 SUPERFAMILY Leucine zipper domain 366 415 IPR046347 GO:0003700|GO:0006355
Stsc120854g00021 444 CDD bZIP_plant_BZIP46 366 420 - -
Stsc120854g00021 444 SMART brlzneu 362 423 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120854g00021 Stsc-Chr120854 165127 168890 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120854g00021 1 444 bZIP Transcription Factor Family AT4G34000 44.306 4.54e-106 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc120854g00021 bZIP_1 1.6e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120854g00021 K14432 - gmx:100776600 498.049