Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120854g00014 ATGAAAATGATGGCTACTCCAAATAAACCAATGGCTGTAATGATGCCTGACCCTTTGGAACAGAAGGGAAAAGATATCACCGAATTGAATGGTAACATACTTCAATCACAGCCACATAACTCANNNNNNNNNNATGGTTCAGTAGCTATTCTTTGGGACATTGAAAATTGTCCTGTTCCGAGTGATGTCCGCCCTGAAGACGTAGCAGGAAATATAAGGATGGCGTTGCAAGTGCATCCAGTAATTCAAGGAACTGTTATGGTATTTTCTGCTTACGGGGACTTCAATGCTTTCCCTAAGCGACTTAGAGAGGGATGTCTAAGAACTGGTGTTAATCTCATTGATGTTCCCAATGGTAGAAAAGATGCTGCCGATAAAGCAATCTTGGTTGACATGTTTTTATTTGCTCTTGACAACCCTCCCCCATCATCTATTATGCTAATATCCGGAGACGTTGACTTCGCTCGAGCACTTCACATTCTTGGACAACGGGGATACACTATAATTCTGGTAATCCCGTCTGGCGTGGGTGTTTCATCTGCTTTATGCAATGCTGGAAAATTTGTCTGGGATTGGCCTAGTGTTGCTCGTGGTGAAGGATTTGTTCCCCCGGCAAAGGCTTTAGCACCACCTCGTGGAGGTTCAGTTGAGCTCTCTGGCTATTTTTTGGGGTGCCATATTAATGACAACTTCGAGGGACAAAATGAGGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAGATTTTATAACTCGAGGGATTTCTCAATGGTTTCACAATCTCTATCTGAATACAATTGTGCCGCATCGAACACGGCTGGCCCACTGACAACTGCGAGATCACACAGCCTTCCACCTGGGATGCTTGATGTTTCAGGAATATCTATGCCTTCTAATGACAATAATGAAGGGAACTCTTGGGGCCCCATGTCTAGCGATTTAAACGTTCTCAAAGGCCAGTTGGTAAGGTTGCTTGAACTTTCTGGAGGGTGCCTGCCTCTGTCTCGAGTTCCAACAGAGTATCAGAAAACTTATGGAAGAACACTTTATGTATCTGATTATGGAGCGGTTAAGTTAGTCAATCTTTTCAAGAAGATGGGTGATCCAATGGCAGTGGAAGGGAAAGGGCAGCGCAAATTTGTGTATCTCAGAAACTTCAAGGTAGGCCCAAGCGCTCCCCCACTGGCTCTAGCAAAGAAAGACAAGAAAGGAAAGGGGCTTCCGGAAGAGAATGCGAATGCTGTCACCGGTGGTGGCTCATCGGATGAGTTCTCAGACGAAGAAAGACTAGTCATGGAAGAACATGATGAGAGAAATTGTGTAGGAAAGGGTATTCAAAGGAGAGCATCTAGGTATGATATCGACGACCGTGCTCTTGAGAAGTTCAAGTACGAGCTTCAAGAGATTCTAGTAAGCTACTCGTGTGGAATATTCCTAGGTTGTTTCGAGGACATATACCAACAGCGGTACAAGAGACAATTGGAATATCAGAGATTTGGAGTGAACAAGTTGGAGGATTTGTTTGAGAAAGTCAATGATATTGTAGTATTGGTTGAGGAACCAGGAAGCAAGAGGAAGTTCCTTGCTCCAGTAGGGGGTTAA 1602 0.4388 MKMMATPNKPMAVMMPDPLEQKGKDITELNGNILQSQPHNSXXXXGSVAILWDIENCPVPSDVRPEDVAGNIRMALQVHPVIQGTVMVFSAYGDFNAFPKRLREGCLRTGVNLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFARALHILGQRGYTIILVIPSGVGVSSALCNAGKFVWDWPSVARGEGFVPPAKALAPPRGGSVELSGYFLGCHINDNFEGQNEEEAIVYRGMSQRFYNSRDFSMVSQSLSEYNCAASNTAGPLTTARSHSLPPGMLDVSGISMPSNDNNEGNSWGPMSSDLNVLKGQLVRLLELSGGCLPLSRVPTEYQKTYGRTLYVSDYGAVKLVNLFKKMGDPMAVEGKGQRKFVYLRNFKVGPSAPPLALAKKDKKGKGLPEENANAVTGGGSSDEFSDEERLVMEEHDERNCVGKGIQRRASRYDIDDRALEKFKYELQEILVSYSCGIFLGCFEDIYQQRYKRQLEYQRFGVNKLEDLFEKVNDIVVLVEEPGSKRKFLAPVGG 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120854g00014 533 MobiDBLite consensus disorder prediction 294 308 - -
Stsc120854g00014 533 ProSiteProfiles OST-type HTH domain profile. 313 385 IPR025605 -
Stsc120854g00014 533 Gene3D - 455 527 IPR041966 -
Stsc120854g00014 533 Gene3D - 311 382 IPR041966 -
Stsc120854g00014 533 CDD LOTUS 314 383 - -
Stsc120854g00014 533 CDD LOTUS 459 522 - -
Stsc120854g00014 533 PANTHER LIMKAIN B LKAP 34 497 IPR024768 GO:0005777|GO:0010468
Stsc120854g00014 533 MobiDBLite consensus disorder prediction 289 308 - -
Stsc120854g00014 533 MobiDBLite consensus disorder prediction 397 423 - -
Stsc120854g00014 533 CDD PIN_limkain_b1_N_like 48 173 - -
Stsc120854g00014 533 Pfam OST-HTH/LOTUS domain 459 523 IPR025605 -
Stsc120854g00014 533 Pfam OST-HTH/LOTUS domain 315 379 IPR025605 -
Stsc120854g00014 533 Gene3D - 44 193 - -
Stsc120854g00014 533 Pfam NYN domain 48 186 IPR021139 GO:0004540
Stsc120854g00014 533 ProSiteProfiles OST-type HTH domain profile. 458 532 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120854g00014 Stsc-Chr120854 137721 140385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120854g00014 46 198 C2H2 Transcription Factor Family AT5G61190 43.137 1.83e-28 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120854g00014 - - ahf:112715639 946.806