Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120854g00011 ATGCCTGGCAGTTTAGAACCGTTGGATTTGGGGGTTCAGATTCCGTACCACTTCAGGTGCCCAATCTCGCTTGAGCTCATGCGCGACCCGGTCACCGTCTGTACCGGACAGACCTACGACCGTCCAAGCATCGAGTCATGGGTGGCTACCGGCAACACCACCTGTCCGGTTACACGAGCACCCCTAACGGACTTCACTCTAATCCCTAACCACACACTCCGGCGGCTAATCCAAGAATGGTGCGTCGCCAACCGCGCTTTCGGCGTCGAGCGGATTCCCACGCCCAAACAGCCTGCAGACCCTTCCGTGGTTCGCTCCTTGTTGAACCAAGCCTCGTCAGATTCCGCGCCGACTCAGCTCCGAGTCAATTCGCTTCGTCGACTTAGAGGATTCGCCCGTGATTCGGATAAGAATCGCTCTCTCATTGCCTCTCTTGGCGCCGTTCAGATCTTATTAACCGTCGTTTTCTCGCGTAACGGTTCCGACGAGATGAACCACGAGGCGCTCGCGATTCTCGTGATGTTCTCACTCGGCGAGAATGAATGCGAGTTTGTTGCGTCTGATTTGGATAAGATCCGGTACCTGTCAATGCTATTGTTTCATAGTTCCATGGAGGTCCGTGTTAATTCGGCCGCGTTGATCGAAATCGTTGCCGCCGGGACTCGGTCGCCTGAGCTCCGATCTCAGATCAGCAATGTTGACGAAATCTACGAAGGCGTGATTGATTTGCTTCGGAACCCAATCTCGTTCCCGCGCGCGCTCAAGATCGGGATCAAGGCGCTGTTCGCGCTGTGTCTGGTGAAGCAGACGCGGCACAAGGCGGTGGTGGCGGGTGCGCCGACGGTTCTCGTCGACAGGCTCGCCGATTTCGAGAAGTGCGACGCTGAGAGAGCGCTGGCGACGGTGGAGCTCCTCTGCCGGGTTCCGGCGGGTTGCGCGGCATTCGCTGAACACGCGCTGACGGTGGCACTCCTTGTGAAGATAATACTGAAGATCTCAGAGCGCGCAACAGAGTACGCCGCCGGGGCGCTTCTGGTGCTGTGTTCGGAGTCGGAGCGGTGCCAGAGGGAGGCGGTGGCGGCGGGTGTGCTGACTCAGCTTCTGCTTTTGGTCCAAAGCGATTGCACGGAGAGGGCGAAGAGGAAGGCGCAGCTGTTGCTGAAGCTGCTTCGGGATTCGTGGCCTCAAGATTCCATCGGAAATTCTGACGATTTTGCATGCAGCCAGGTTTTGGTGGTGCCGCTTTGA 1248 0.5769 MPGSLEPLDLGVQIPYHFRCPISLELMRDPVTVCTGQTYDRPSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPSVVRSLLNQASSDSAPTQLRVNSLRRLRGFARDSDKNRSLIASLGAVQILLTVVFSRNGSDEMNHEALAILVMFSLGENECEFVASDLDKIRYLSMLLFHSSMEVRVNSAALIEIVAAGTRSPELRSQISNVDEIYEGVIDLLRNPISFPRALKIGIKALFALCLVKQTRHKAVVAGAPTVLVDRLADFEKCDAERALATVELLCRVPAGCAAFAEHALTVALLVKIILKISERATEYAAGALLVLCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDDFACSQVLVVPL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120854g00011 415 Gene3D - 91 404 IPR011989 -
Stsc120854g00011 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Stsc120854g00011 415 SUPERFAMILY RING/U-box 12 90 - -
Stsc120854g00011 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Stsc120854g00011 415 SUPERFAMILY ARM repeat 103 390 IPR016024 -
Stsc120854g00011 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Stsc120854g00011 415 CDD RING-Ubox_PUB 15 67 IPR045210 -
Stsc120854g00011 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Stsc120854g00011 415 PANTHER WDSAM1 PROTEIN 12 396 IPR045185 GO:0061630
Stsc120854g00011 415 FunFam RING-type E3 ubiquitin transferase 8 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120854g00011 Stsc-Chr120854 84299 85546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120854g00011 1 412 U-box Gene Family AT3G19380 68.258 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120854g00011 - - gmx:100778730 681.019