Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120853g00025 ATGTTCCCAAGTTGTTACAAGGCTAAAATCAAGGAAGAAGAAGAAGAGAGGGTTTCAAAACATTGCTCTTTCCAAAGGCTAGGCCTCTCTGATGTAAGCATTACAAGCTCACCTAAGGACATTGAAGATCTTTCAACTTCTTTTGTTGGATCAAAGCTCTACACATTCACCTTAGAGGAGCTTAAAGAAGCAACACATAATTTCTCATGGAGTAACATGCTTGGTGAAGGTGGGTTTGGACCTGTTTACAAAGGCTTTGTTGATGACAACCTTAAACGTGGTTTGAAGGCTCAATCCGTGGCGGTTAAACGCTTAGACTTGGATGGCTTGCAAGGTCACAGAGAGTGGCTGGCGGAGATTATATTTCTTGGGCAGCTAAGGCATTCGCATCTTGTTAAGTTAATTGGATACTGTTGTGAAGAAAAGAACAGGCTTTTGGTTTATGAATACATGCCAAGAGGGAGCTTAGAGAACCAACTATTCAGAAGGTATTCTTGTACCATGCCATGGTCAACAAGGATGAAGATTGCATTAGGTGCTGCTAAGGGCCTTGCATTCCTTCATGAAGCAGATAAACCTGTCATATACAGAGATTTCAAAACTTCAAATATCTTACTTGACTCAGACTACACAGCTAAATTATCAGACTTTGGGCTTGCTAAGGATGGCCCTGAAGGAGAAGAAACACATGTAACAACAACACGCATAATGGGAACAAAGGGCTATGCCGCCCCTGAATATGTCATGGCAGGTCACCTTTCAACCAAGAGCGATGTGTATAGCTATGGAGTGGTTCTGTTGGAACTTCTTACGGGGAAGCGGGTGGTGGATAGGAGCCGGCCGAGTCGAGAGCGGAGCCTGGTGGAATGGGCAAGGCCTATGCTGAGGGATCAAAGGAAGCTGCACCATGTGATGGACCCAAGGTTGGAAGGGCAGTTTCCTATGAAAGGAGCAGTTAAGGTTGCTGCATTGACATATAAATGCTTGAGTCACAACCCCAATCCAAGACCCTCAATGAGTGATGTGGTGAAGACATTGGAGTCACTTCAAGACTTTGATGATGTCTTCATAGAACCATTTGTTTATATTGCAGTTAGTGAAAAGAAATAG 1110 0.4369 MFPSCYKAKIKEEEEERVSKHCSFQRLGLSDVSITSSPKDIEDLSTSFVGSKLYTFTLEELKEATHNFSWSNMLGEGGFGPVYKGFVDDNLKRGLKAQSVAVKRLDLDGLQGHREWLAEIIFLGQLRHSHLVKLIGYCCEEKNRLLVYEYMPRGSLENQLFRRYSCTMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKTSNILLDSDYTAKLSDFGLAKDGPEGEETHVTTTRIMGTKGYAAPEYVMAGHLSTKSDVYSYGVVLLELLTGKRVVDRSRPSRERSLVEWARPMLRDQRKLHHVMDPRLEGQFPMKGAVKVAALTYKCLSHNPNPRPSMSDVVKTLESLQDFDDVFIEPFVYIAVSEKK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120853g00025 369 Gene3D Phosphorylase Kinase; domain 1 30 150 - -
Stsc120853g00025 369 PANTHER OS01G0588500 PROTEIN-RELATED 37 350 - -
Stsc120853g00025 369 ProSiteProfiles Protein kinase domain profile. 68 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120853g00025 369 CDD STKc_IRAK 74 349 - -
Stsc120853g00025 369 Pfam Protein tyrosine and serine/threonine kinase 70 346 IPR001245 GO:0004672|GO:0006468
Stsc120853g00025 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Stsc120853g00025 369 Gene3D Transferase(Phosphotransferase) domain 1 151 357 - -
Stsc120853g00025 369 SUPERFAMILY Protein kinase-like (PK-like) 44 348 IPR011009 -
Stsc120853g00025 369 FunFam Probable serine/threonine-protein kinase PBL8 151 361 - -
Stsc120853g00025 369 FunFam Serine/threonine-protein kinase BIK1 35 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120853g00025 Stsc-Chr120853 145354 146991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120853g00025 55 346 Glycoside Hydrolase AT3G07070 53.220 2.26e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc120853g00025 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120853g00025 - - gmx:100805771 605.905