Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120853g00011 ATGGATAATAATCCTTGTTTTGTTGTACCATACCATGATCCATATGATACTCCTCCACTCAGCCCCAGTTTTTTCGACATTTCCAACCCCACCCTTTTCGATCTTACCAATAATGTCCCCACAACGGGAACAGGACCCACTCACTCTCAACAACAGAATCATGGAGTCCAAGATACTAATAATCTCCAACCAACTTTTGATCCCATGATTCAAGATATTAACAACTATGTGGGAGGAACACAAGGCAACAACAACTTCGAATCCATTCCGTTGTTACAAGTGCATTCTAATGAAGGTTTGCCGCAGAATGATTTAATCAACAATGTGAATACTATGACACTGTCCTATTGGCCCCAGCCACCGGTCCCTTTTTCTTGTAGCTGTTGTAGTGTCCTCAGGGAAATCGTTTACACCAATGGGTTTAACTTTACGAAACTCGAAGTTCATGGAAGGCCGGGTTTGATCTCTCATGCAATTCAACATCCCACTATGAATGGAGATTTTGCTTCCACTAGCAACCTTCAATATCAAATGATTGATTTTTGTAGGAGAAGCATTGAAGATGTGAAGAATTTCCTGATTGAGTATTGTAGAGTGCAATGTGCGGCAGGGTACTTTATGTTGCAAGATCCATTATCTGCTTATTATGAAGCCCTATGCATTGGACTCGAATGGGTTGACGAATTGAGCGATGACACTGACGATTTGGATGCAAGCAATTCAGATGATGAGAATGAACAAGTGGCTGATAATGGAGGAGGAACATCAGGAAAGACTCCTAGAAAAAATTCTCTTTCAGAACAGAGGGAAAGAGCGGGGAAGATGAAATTGGACGATTTTGCCCCTTATTTTCATATCCCAATTGAGGAAGCATCGAGGCAAATGAATATCTGCCCCACTGTTGTGAAGAAAATTTGCCGTAGGGATGGATTAAAACGATGGCCTTACAGAAAGATCAAAAGCACTGCAAAGAAGATCTCACAACTTAAGAAAACGATGGAATCAAAAGACGAAAGGGCAAAGGCAAGAATTCAGGCAGAAATTTATAGGCTCCATCTAAAATTAAGAGAGGTTTGTGCTGGACGATACCCATCTGGATTATTTATACCATGA 1113 0.4097 MDNNPCFVVPYHDPYDTPPLSPSFFDISNPTLFDLTNNVPTTGTGPTHSQQQNHGVQDTNNLQPTFDPMIQDINNYVGGTQGNNNFESIPLLQVHSNEGLPQNDLINNVNTMTLSYWPQPPVPFSCSCCSVLREIVYTNGFNFTKLEVHGRPGLISHAIQHPTMNGDFASTSNLQYQMIDFCRRSIEDVKNFLIEYCRVQCAAGYFMLQDPLSAYYEALCIGLEWVDELSDDTDDLDASNSDDENEQVADNGGGTSGKTPRKNSLSEQRERAGKMKLDDFAPYFHIPIEEASRQMNICPTVVKKICRRDGLKRWPYRKIKSTAKKISQLKKTMESKDERAKARIQAEIYRLHLKLREVCAGRYPSGLFIP 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120853g00011 370 Coils Coil 319 339 - -
Stsc120853g00011 370 PANTHER PROTEIN RKD4 114 351 IPR044607 GO:0003700
Stsc120853g00011 370 MobiDBLite consensus disorder prediction 234 269 - -
Stsc120853g00011 370 ProSiteProfiles RWP-RK domain profile. 262 342 IPR003035 -
Stsc120853g00011 370 MobiDBLite consensus disorder prediction 245 262 - -
Stsc120853g00011 370 Pfam RWP-RK domain 275 321 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120853g00011 Stsc-Chr120853 51714 53197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120853g00011 275 335 NLP Transcription Factor Family AT4G24020 40.984 3.42e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc120853g00011 RWP-RK 4.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120853g00011 - - adu:107470643 600.127