Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120853g00010 ATGGCGACTCAACTCCTCAAGCTCAATCTCTACCCGAAATCTCACATCTCCTTCAACCACGCGCCAAATCGTCATGTTCACTTCCTACCCCTTCTTCCCACTAAACGCCGTCGCCACAACCTTCACCGCAACTGCCACCGCCCGGGATACCTCCGACCACATTTCCTCGTATCTAACTCCTTACGCACCGATATTGGCTCGCCGGAGCCAGCTCAACTTCAGACTACAGACTCCCCTCTCCTGCTCGACGTCTCCGGTATGATGTGCGGCGCGTGCGTCTCACGAGTCAAGAACATCCTCTCCGCCGATGACCGAGTTGACTCGGTCGTAGTCAACATGTTGACCGAGACCGCCGCTGTCAAGCTAAGGCGGATCGACGAGGAGAAGGATGTGGAGGAACCGGCGACCGTCGCGGAGAGCCTGGCCCGGAGACTGAGCGAGTGCGGTTTTCCAACGAAGCGGAGGGTATCGGGTTTGGGAGTTGCGGAGAACGTCAGGAAGTGGAAGGAGCTTGTGAAGAAGAAGGAGGAACTCGTCGTCAAAAGCCGCAGCCGTGTCGCTTTCGCTTGGGCTTTGGTGGCGTTGTGCTGTGGATCTCATGCTTCCCACATTCTTCATTCTTTGGGGATTCACATTGGTCATGGATCGGTTTTGGAAATTCTTCACAATTCATATGTGAAAGGTGGTATAGCACTGGGGGCTCTCTTGGGACCAGGACGAGATTTACTCTTTGATGGTCTAAACGCATTGAGGAAGGGATCACCAAACATGAACTCTCTTGTGGGATTTGGTTCTATAGCTGCGTTTATCATAAGTTCGATATCACTACTGAACCCTGGGTTGGCCTGGGATGCAACGTTCTTTGATGAGCCGGTCATGCTTCTTGGTTTTGTGCTTCTAGGACGTTCTTTGGAGGAAAAGGCAAGGATTCAGGCATCTAGTGATATGAATGAACTCCTTTCATTGATATCTACTCAGTCAAGACTTGTTATTACTTCATCAGAAGGTTCACCATCTACAGATAGTGTGCTCGGTCCTAACACAATTTGTGTTGAAGTCCCAACTGATGATATCCGAGTAGGTGATTCACTGTTGGTGTTGCCTGGAGAGACTATTCCTATAGATGGGAAGGTCATTTCAGGAAGAAGTGTTGTGGATGAATCCATGCTTACTGGAGAATCACTTCCTGTATTTAAGGAGGAAGGCCTTACAGTTTCTGCAGGAACTATAAATTGGGATGGTCCTTTAAGAGTTGAAGCTTCTTCAACTGGCTCCAACACAATGATATCCAAGATTGTATGCATGGTTGAGGATGCCCAGTCACGTGAAGCACCTGTACAAAGGCTTGCTGATTCCATAGCAGGGCCGTTTGTATACAGTGTAATGACTATGTCAGCAGCAACATTTGCATTTTGGTACTATATTGGATCAAACATATTTCCTGATGTTTTGCTCAATGATATTGCGGGCCCAGAAGGGGATCCTTTGCTTTTGAGTTTAAAGCTCGCAGTAGATGTTTTGGTTGTCTCTTGCCCTTGTGCACTGGGTCTTGCCACACCTACAGCAATCCTGGTTGGCACCTCCCTTGGGGCAAGAAAAGGACTTCTTATTAGAGGGGGAGATGTGCTTGAACGCTTGGCCAGTATAAATTATATTGCCCTTGACAAGACGGGAACCCTCACCAAAGGAAAACCAGTTGTCTCCGCCGTGAGCTCTATTAATTATGGAGAATCAGAAATACTTCAGATTGCTGCTGCAGTGGAGAAAACAGCATCTCATCCAATTGCAAAGGCTATTATTAATAAAGCTGAGTCATTAGAGCTGATCCTTCCAGTCACAAAAGGACAACTGGTAGAACCAGGCTTTGGAACCTTGGCAGAAATAGATGGGCGTTTGGTTGCAGTTGGATCTTTAGAATGGGTCCATGAACGCTTCCAGACAAAAATGAACCCATCTGATTTAGTGAATCTTGAACATACTTTGATGAATCATTCATCAGAGACATCTTCAAACTATTCAAAAACTGTTGTCTATGTTGGACGTGAGGGGGAAGGCATCATTGGCTCTATCACCATATCTGACGTTGTGCGTGAAGATGCTCAATCCACCGTAGCAAGACTCAAGCAGAAGGGGATTGAAATGGTCCTCTTATCAGGAGACAGGGAAGAAGCAGTTGCAACTATAGCCCAGACAGTTGGGATTGAAAGCGATTTTATCAAAGCGTCATTATCCCCACAGCAGAAATCTAAGTTTATTTCGTCTTTGAAAGATTCTGGACATCATGTTGCAATGGTTGGTGATGGGATAAATGATGCACCCTCTTTGGCTGTGGCTGATGTTGGGATTGCTCTACAAAATGAAGCTCAAGAGAATGCTGCATCTGATGCCGCATCCATTATACTTCTTGGAAACAAAATTTCTCAAGTTGTTGATGCACTAGACCTCGCACAAGCAACCATGGGAAAAGTGTACCAAAATTTGTCTTGGGCGGTAGCCTACAATGTAGTTGCTATTCCCATTGCTGCTGGTGTGTTACTTCCCCAGTTTGAATTTGCCATGACACCTTCACTATCAGGAGGGCTGATGGCTATGAGCTCCATCTTCGTGGTTGGCAACTCGTTGCTTCTACAACTCCATGGTTCTCATACCTCCAAAAAGGTCACATAA 2667 0.4672 MATQLLKLNLYPKSHISFNHAPNRHVHFLPLLPTKRRRHNLHRNCHRPGYLRPHFLVSNSLRTDIGSPEPAQLQTTDSPLLLDVSGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVKLRRIDEEKDVEEPATVAESLARRLSECGFPTKRRVSGLGVAENVRKWKELVKKKEELVVKSRSRVAFAWALVALCCGSHASHILHSLGIHIGHGSVLEILHNSYVKGGIALGALLGPGRDLLFDGLNALRKGSPNMNSLVGFGSIAAFIISSISLLNPGLAWDATFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSSEGSPSTDSVLGPNTICVEVPTDDIRVGDSLLVLPGETIPIDGKVISGRSVVDESMLTGESLPVFKEEGLTVSAGTINWDGPLRVEASSTGSNTMISKIVCMVEDAQSREAPVQRLADSIAGPFVYSVMTMSAATFAFWYYIGSNIFPDVLLNDIAGPEGDPLLLSLKLAVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLASINYIALDKTGTLTKGKPVVSAVSSINYGESEILQIAAAVEKTASHPIAKAIINKAESLELILPVTKGQLVEPGFGTLAEIDGRLVAVGSLEWVHERFQTKMNPSDLVNLEHTLMNHSSETSSNYSKTVVYVGREGEGIIGSITISDVVREDAQSTVARLKQKGIEMVLLSGDREEAVATIAQTVGIESDFIKASLSPQQKSKFISSLKDSGHHVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQATMGKVYQNLSWAVAYNVVAIPIAAGVLLPQFEFAMTPSLSGGLMAMSSIFVVGNSLLLQLHGSHTSKKVT 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120853g00010 888 Gene3D - 544 816 IPR023214 -
Stsc120853g00010 888 FunFam Copper-transporting ATPase PAA2, chloroplastic 564 696 - -
Stsc120853g00010 888 Pfam haloacid dehalogenase-like hydrolase 549 779 - -
Stsc120853g00010 888 SFLD p-type atpase 536 818 IPR044492 -
Stsc120853g00010 888 Gene3D - 309 440 - -
Stsc120853g00010 888 NCBIfam HAD-IC family P-type ATPase 350 857 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc120853g00010 888 ProSitePatterns E1-E2 ATPases phosphorylation site. 555 561 IPR018303 -
Stsc120853g00010 888 PRINTS P-type cation-transporting ATPase superfamily signature 553 567 - -
Stsc120853g00010 888 PRINTS P-type cation-transporting ATPase superfamily signature 765 784 - -
Stsc120853g00010 888 PRINTS P-type cation-transporting ATPase superfamily signature 710 720 - -
Stsc120853g00010 888 PRINTS P-type cation-transporting ATPase superfamily signature 386 400 - -
Stsc120853g00010 888 PRINTS P-type cation-transporting ATPase superfamily signature 688 699 - -
Stsc120853g00010 888 Pfam E1-E2 ATPase 347 533 - -
Stsc120853g00010 888 SUPERFAMILY Calcium ATPase, transduction domain A 348 436 IPR008250 -
Stsc120853g00010 888 SUPERFAMILY Calcium ATPase, transmembrane domain M 289 547 IPR023298 -
Stsc120853g00010 888 SUPERFAMILY HMA, heavy metal-associated domain 80 122 IPR036163 GO:0046872
Stsc120853g00010 888 SUPERFAMILY HAD-like 551 873 IPR036412 -
Stsc120853g00010 888 ProSiteProfiles Heavy-metal-associated domain profile. 78 153 IPR006121 GO:0046872
Stsc120853g00010 888 SFLD C1.7: P-type atpase like 536 818 - -
Stsc120853g00010 888 Gene3D - 564 696 IPR023299 GO:0000166
Stsc120853g00010 888 CDD HMA 82 151 IPR006121 GO:0046872
Stsc120853g00010 888 FunFam Copper-transporting ATPase 1, putative 309 440 - -
Stsc120853g00010 888 Pfam Heavy-metal-associated domain 82 150 IPR006121 GO:0046872
Stsc120853g00010 888 PANTHER ATP7, ISOFORM B 76 878 - -
Stsc120853g00010 888 NCBIfam heavy metal translocating P-type ATPase 257 876 IPR027256 GO:0006812|GO:0016020|GO:0019829
Stsc120853g00010 888 Gene3D - 72 156 - -
Stsc120853g00010 888 CDD P-type_ATPase_HM 185 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120853g00010 Stsc-Chr120853 43806 51345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120853g00010 248 877 Primary Pumps ATPases AT1G63440 36.279 1.08e-113 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120853g00010 K17686 - gmx:100127402 1400.19