Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120853g00002 ATGAAACCTGGCATGAGATCCGGAGGCCCCTCTGGGGTTTTGGTGAAGAACAGGGGCTCTTCAGGCTGTTTGATTGTTAGGAAGAAAGGTGATAGATTGAGTGGTGGGGTTGGCAGCTCTTCGAGCTCCATGAAGATGTATGAATCGAAGAAAGTGAATCAAAGAAAGTATGAAGCAAAGAAAGTGAAGAAGAGGCCGAAGGTTGAGTTGAGTAGTAGTGATTCGGAATCGAGTGAGGAGCTATTAATGCCACCTGCTAGAAGGCTTGGTCCTGAGACCATTCGAGTATGCAATGGTTTGACTGCCGTTGAGCGGGATGAGGTTGGTGGCAGTGGAACCGGGAGGAAGCGGGAGAGGTTTGAGGACATTAGGCATAACGTTGATGAGATGGGGGAGGGAAAGGATTTGGAGAGTAGGGAAAAGAAACGTAGTAAGATTGATGTGTTTGATTTTGATGAATACGATGATATGGATGCGGACATGATGAGGAGGAGCCATTTAGATAGCAATGGCGGCGGCTTTGGAGGGGGAAGGTCTGCGGGAGCAACGCATGCTGCTAGAAGTGGCAATGATAGGGAATTCAAAACTGGTTCAAGCAAACACACTGTTAATAAGAGAAAGAACTCCCAATGTGACAAGGCAAGTAGCTTGCACTCAGAAGATATTAAATTAAAGAAGGATGCATCTCAGCATCGTCAACCCTTGCCAAGGGAGAAGTTTAATTCTGAAGAGTCCATTAGGGTTCAAGGGAAAAATGGTGTTCTGAAGGTGATGGTTAACAAGATGTGTAGTCCATCGGATCAACATGATAATTCCAAACCTGTAGAAGGGCGAGGAAGTTTGAGGGCTGAGGGCATTGCCAAGAAGAATGTTCTGGTACATAAATCATCTTACATGGAAAAAAACCCTGTTACGAAACAAGGTTTACATGTTAGGACAGAGAAGAAATTGGTAGCAACAAGAACATCTTTGTCAAGTAACAACAGTAAGGATGATGCGCAGGGTTCAGATCACAGTGACACATCATTGAAAGTGGGAGTGAAGTGCATTAAAGCTTTCAAGTCTTTAAAGAGGGGAACCTCTGACGATGAACAAACTTCTAAGCAGGAGAAAACCCCAACCACAACAGGAACTAAAGAGGAGAAAATAAGGCGTGGTAGTAGCACAGAAAAGCAGAAGCTACGAGAACAGATACGGGAGATGCTTCTTAATGCAGGTTGGACCATAGACTATCGCCCTCGGAGGAATAGAGACTATCTTGATGCAGTTTACATTAATCCTAGGGGTACAGCCTATTGGTCTATCATCAAGGCCTATGAGGCATTTCAGAAGCAATTGAATGATAACGATCCTAGGGCCATGCCCAAAGGGAAGTGCTCTTTTGCTCCTATCGCAGATGATGTGCTTAGTCAGTTAACAAGGAATACTCAGAAGAAGATGGAGAAAGAGTTAAGGAAGAAGAAAAAGCAGAAGGAGGAAAGAGATGATAGTGATAGTGACAGTGGAAAAGAACCTCGCATTACGAGATCTTTAAGCAACAAGTGCGATGTGAATGGCATGGAAAGTGATAGCGATGAAGAGAAATTAAGCTCCTTTATAAAGCGGGGGCGTAAATCAATGAAAAATAAAATGATTGAAAAGACTGGTAGATCTGCGAGCCAGAAAGCTGTCCTTCACCCAAATGAAGGAACTGAAAAATCACTTTCAGGAAATGATCCTCATCAACGACATGGGAGGAAAAGTAGAAAGCATGGAAGGTGTACTTTATTGGTTCGTAGTTCCAACATAGGTTCAAATTCAGAGTGTGATGACTTTGTTCCATATATGGGCAAACGAACAGTGCTTTCGTGGTTGATTGACTCTGGAACTGTACAGTTAAGCCAAAAGGTTCTGTATCGTAGAAGGAAACGTGTAATGCAGGAGGGATGGGTCACCAGGGATGGGATTCACTGTGGTTGCTGTAGTAAAATACTCACTGTTTCCAAGTTTGAGCTTCATGCAGGAAATATTGATGGTAATGATCCAAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTGATCTGTTGTGATGGCTGTCCATCAACTTTTCATCTCAGTTGCTTGAATATACAGATGCTCCCCCCTGGTGAATGGCATTGTCCAAATTGCACATGCAAATTTTGTGGAGTAGTCTGTGGTCCTGTAAACAAAGAAGATGAATCAACTTCAAATGCCCTGCATAGATGCAACTTATGCGATAAAAAATTTCATGAATGTTGTGCTAAGGATGTGAAAACCCTTCCTACTAACTCTGACGTGTCAAGGCCTTCCTTTTGTGGAAGGGGCTGCAAAGAGCTTTTTGAGCACTTGAAGAAATACCTTGGTAACAGGCATGAATTAGATGGAGGCTTTACATGGTCTCTCATTCATAGAACAGAAGACGAATCAGAGTCATCTAGTACGGGAATTATCCAGAGGGTGGAGTGCAACTCCAAGCTAGCTGTTGCATTGACTCTGATGGATGAATGCTTTTTGCCAGTTGTTGATAGGAGAAGTGGGATCAATTTAATACATAATGTTTTATATAATAGTGGGTCAAACTTTAGCCGGTTGAATTACACTGGCTTTTATACTGCTATTTTAGAGCAAGGTGATGAAATAATTTCTGCAGCTTCTATCAGGTTTCATGGAACCAAGTTAGCAGAGATGCCATTCATTGGAACTCGCCATATGTATAGGCATCAGGGGATGTTGCGCCGCCTTTTTTCTGCCATTGAATTGGCCCTATGCTCTCTGAAGGTTGAAAAACTGGTTATTCCAGCAATTTCTGAACTCATTGATACGTGGACAACTGTTTTTGGCTTCATGCATCTTGAAGAATCACTCAGACAGGAAATGAGGTCATTGAATATGTTGGTCTTCCCTGGTATAGATATGTTGGAGAAATTGCTAGTGAAACAAGGAAAACCTGATGGTGTTGAGAAAATGGAAACTAGAGATGAATTTGTTACTAAGTCTAGTATGGGTGGTAAGTTGGATATGAATTCCTCAGCTCTGGACGATCCTCAACGAAGTGATGATGCTAGTTCAAATCCTGACAATAAAATAAACAATGACTCCAGTGATGCTTCTCAAGAACAGGAAAATCACCTTTTGGTTGGCAGCAATTTATGCTCCAAATCTCATTCTGCAGAGAGATCATCTGATTTTGTTTCAAATAAATGTGTTTCTCCTTCTAGTACCAGCAATGATGTGCTAGAAGCAAACAATAAAACAGTGACAGCTTCTCCTGATAGTAATAAATTGCATTCGGTGAATGTATGTCCAGACTCTGATTCTGCAAAAATTCTGGCACAACCTGTTTCTGACAGGAAATGTCACATGCACACTGATGACGTTAATCCAGGGTTGGATTCTCAAGTGGGAGATAATGCTTTTTCTTCTAACGAGGTTGATATGAATGATATCCATGACGAGGTTCTTGAAGTTGGTCATTTACCGAATTTATCTCACGATAAAATTAGTAAGGAGAACAATGAAGTTGTAGATGTCTCTGGTTCTGTTCCTGATCATGCTGATGAGAATTCTTTGCGAGTAAAATCTGATTTGAAGGATGAAATTATATTGGTGGGAGAAAAGAATTTGGACAAAGAAGTTGCATCACGTGAAATGTGTTTGGATGAAACTGGCCTAAGTGCACCTGGACCTGGTGGTAGTTCTGAAACTGATACAGCTTAA 3726 0.4179 MKPGMRSGGPSGVLVKNRGSSGCLIVRKKGDRLSGGVGSSSSSMKMYESKKVNQRKYEAKKVKKRPKVELSSSDSESSEELLMPPARRLGPETIRVCNGLTAVERDEVGGSGTGRKRERFEDIRHNVDEMGEGKDLESREKKRSKIDVFDFDEYDDMDADMMRRSHLDSNGGGFGGGRSAGATHAARSGNDREFKTGSSKHTVNKRKNSQCDKASSLHSEDIKLKKDASQHRQPLPREKFNSEESIRVQGKNGVLKVMVNKMCSPSDQHDNSKPVEGRGSLRAEGIAKKNVLVHKSSYMEKNPVTKQGLHVRTEKKLVATRTSLSSNNSKDDAQGSDHSDTSLKVGVKCIKAFKSLKRGTSDDEQTSKQEKTPTTTGTKEEKIRRGSSTEKQKLREQIREMLLNAGWTIDYRPRRNRDYLDAVYINPRGTAYWSIIKAYEAFQKQLNDNDPRAMPKGKCSFAPIADDVLSQLTRNTQKKMEKELRKKKKQKEERDDSDSDSGKEPRITRSLSNKCDVNGMESDSDEEKLSSFIKRGRKSMKNKMIEKTGRSASQKAVLHPNEGTEKSLSGNDPHQRHGRKSRKHGRCTLLVRSSNIGSNSECDDFVPYMGKRTVLSWLIDSGTVQLSQKVLYRRRKRVMQEGWVTRDGIHCGCCSKILTVSKFELHAGNIDGNDPNDDTCGICGDGGDLICCDGCPSTFHLSCLNIQMLPPGEWHCPNCTCKFCGVVCGPVNKEDESTSNALHRCNLCDKKFHECCAKDVKTLPTNSDVSRPSFCGRGCKELFEHLKKYLGNRHELDGGFTWSLIHRTEDESESSSTGIIQRVECNSKLAVALTLMDECFLPVVDRRSGINLIHNVLYNSGSNFSRLNYTGFYTAILEQGDEIISAASIRFHGTKLAEMPFIGTRHMYRHQGMLRRLFSAIELALCSLKVEKLVIPAISELIDTWTTVFGFMHLEESLRQEMRSLNMLVFPGIDMLEKLLVKQGKPDGVEKMETRDEFVTKSSMGGKLDMNSSALDDPQRSDDASSNPDNKINNDSSDASQEQENHLLVGSNLCSKSHSAERSSDFVSNKCVSPSSTSNDVLEANNKTVTASPDSNKLHSVNVCPDSDSAKILAQPVSDRKCHMHTDDVNPGLDSQVGDNAFSSNEVDMNDIHDEVLEVGHLPNLSHDKISKENNEVVDVSGSVPDHADENSLRVKSDLKDEIILVGEKNLDKEVASREMCLDETGLSAPGPGGSSETDTA 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120853g00002 1241 MobiDBLite consensus disorder prediction 188 245 - -
Stsc120853g00002 1241 MobiDBLite consensus disorder prediction 1005 1045 - -
Stsc120853g00002 1241 MobiDBLite consensus disorder prediction 28 142 - -
Stsc120853g00002 1241 Coils Coil 473 494 - -
Stsc120853g00002 1241 MobiDBLite consensus disorder prediction 476 510 - -
Stsc120853g00002 1241 MobiDBLite consensus disorder prediction 1 20 - -
Stsc120853g00002 1241 MobiDBLite consensus disorder prediction 162 247 - -
Stsc120853g00002 1241 MobiDBLite consensus disorder prediction 991 1045 - -
Stsc120853g00002 1241 ProSiteProfiles Zinc finger PHD-type profile. 677 722 IPR019787 -
Stsc120853g00002 1241 MobiDBLite consensus disorder prediction 109 142 - -
Stsc120853g00002 1241 Pfam PHD-finger 680 722 IPR019787 -
Stsc120853g00002 1241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 776 IPR013083 -
Stsc120853g00002 1241 MobiDBLite consensus disorder prediction 1222 1241 - -
Stsc120853g00002 1241 SUPERFAMILY FYVE/PHD zinc finger 669 726 IPR011011 -
Stsc120853g00002 1241 CDD PHD2_CHD_II 680 719 - -
Stsc120853g00002 1241 SMART PHD_3 679 720 IPR001965 -
Stsc120853g00002 1241 SMART PHD_3 723 780 IPR001965 -
Stsc120853g00002 1241 MobiDBLite consensus disorder prediction 358 392 - -
Stsc120853g00002 1241 MobiDBLite consensus disorder prediction 319 341 - -
Stsc120853g00002 1241 PANTHER PHD FINGER PROTEIN 12 364 1096 IPR042163 GO:0003714|GO:0045892
Stsc120853g00002 1241 Pfam Tify domain binding domain 642 677 IPR032308 -
Stsc120853g00002 1241 MobiDBLite consensus disorder prediction 546 568 - -
Stsc120853g00002 1241 MobiDBLite consensus disorder prediction 519 534 - -
Stsc120853g00002 1241 MobiDBLite consensus disorder prediction 474 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120853g00002 Stsc-Chr120853 2991 8189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120853g00002 4 981 PHD Transcription Factor Family AT4G14920 44.284 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc120853g00002 PHD 4.9e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120853g00002 - - gmx:102666194 1335.09