LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120851g00023	ATGGCTGTCCGTCTGGCCGTTATTATTTTCTTGGCCTTAGCCTCAACCATCACGCCGCCGTGTCCGACCTCTGCCGCCTTCTTCCTCCCCCGAGACAACTACCTCATCGATTGCGGTTCGGACACCGGAACCACCCTCCCGGACGGAAGAACATTCAAATCAGACCCAGAATCCAACACTTACTTGGAAGCCAATGATCAAAACAAGGTGTCAATAGAAAATGGCAACAATAATAACCCTAATCTCCCAAACCCATTGTACTCAACAGCAAGAATCTTCATGCAAGAAGCCAAATACTCCTTCCATTTAATCCAACCAGGTTACCATTGGATTCGCCTTTATTTCTACCCAATCAAGAACAACACCTTTGATCTCCAAAAAGCTACCTTCTCCGTTAACGCCCAAAAATATGTTCTTCTCCATAACTTCAATGTTAACAACAATGACAAGCCAATTTTAAAGGAGTACCTCATCAATGCAAATGATCCTATCTTCACATTATCCTTCACTCCGATGAAGAACTCGGCGGCGTTTATCAACGCCATCGAAATAGTCTCCGTCCCGGACAAGGTTCTTTTCGACTCTGGCTCGAACCTTTTCCGGGTCGGAGACTATTCCGGCCTGTTTAGCTACGCTTTCCAGCCGGTCTACAGGATAAACAACGGCGGACCTGCGGTCACGGCGTCGAGCGACACATTAGGCCGGAATTGGGAGAACGACGAGCCTTATATCACGGTGAAGAACGCCGCCATGGATGTGGTTCTACCTCCAAATACAATCAAGTACCCTGCGGATAATCCGAACATCTCTCCGATTATTGCTCCGCCAACGGTGTACGCGTCGGCGACGGAGATGAGCAACGAGACGGCGGTGGATCAGCCGAATTTCAACATCACGTGGAAGTTTGACGTGGATACTTCTTTCAGCTACCTTGTGAGGTTGCATTTCTGCGACATTGTAAGCAAGAGTTTGAACGAGCTTTACTTCAATGTCTACATAAACGAAAAAACCGCCATTCCCACGCTTGATTTGTCAAGCATCACTCAAGCATTGGCGACTCCTTATTACCGCGACTTCGTAGTCAACGCGAGTTTGATGACTCAAGAAGGAATCAAGATTCAGGTTGGAGCCTCGCTTGCAAGAGGAGGAAGCGGGAACGCCATAATGAACGGAATCGAGATCTTGAAGATGAGTAACTCTTTGGATAGTTTGGACGGCCAATTCGGCCTAGACGGAAGCAGCGGCGGTATCTCTTACCGCGGAGCGGTGGCCGGGGTTGGGTTCGCGATGATGTTCGGCGCGTTCGTCGGGCTTGGCGCCATGGTTATCAGGTGGCACAGGCGGCCTCAAGATTGGCAGAAACGGAACAGTTTCTCGTCATGGTTGCTTCCGGTGCTTGCTGGAGATAGTACCTTCATGAGTAAAAATGGTTCCGGGAAGAGCAATTTCTCCTCGATGGGGATGGGTTTAGGGCGGTTCTTCTCCTTCGCGGAGCTTCAAGAAGCTACCAAGAACTTCGATAAAGCAAACATTATCGGAGTTGGCGGATTCGGCAATGTTTACTCCGGTGTAATCGACGAGGGGACTCAGGTTGCCGTGAAGAGAGGGAATCCGCAATCGGAACAAGGGATTAACGAATTCCAAACCGAGATCCAAATGCTTTCTAAGCTTAGGCATAGGCATTTGGTTTCTTTGATCGGATACTGCGATGAAAACGATGAAATGATTTTGGTTTATGAGTACATGCCTAATGGACACTTTAGGGACCATCTTTATGGCAAGAACATGGTGGGACCACCGCTTTCTTGGAAGCAAAGGCTGGAAATCTGCATTGGCGCTGCCCGCGGCCTTCACTACCTTCATACCGGCACAGCGCAGGGTATCATCCACCGCGACGTTAAGACGACTAACATATTGCTTGATGAAAATTTCACGGCTAAGGTTTCTGATTTTGGTTTATCAAAGGATGCTCCTATGGGGCAGGGTCATGTTAGTACGGCGGTTAAGGGTAGTTTTGGGTATTTGGATCCTGAATACTTCAGGAGGCAGCAACTGACTGAAAAATCTGATGTGTATTCGTTTGGAGTGGTGCTTCTTGAAGCGTTGTGTGCAAGGCCTGCTATTAATCCTCAGTTGCCCCGGGAACAAGTAAACTTGGCTGATTGGGCTATGCAATGGAAGAGAAAGGGACTTCTTGATAAGATAATTGATCCAAATCTTGTTGGCACCATTAACCCCGAATCGTTGAAGAAGTACGCCGATGCGGCCGAGAAGTGCTTGGCTGATCATGGTGTTGATAGGCCTTCAATGGGAGATGTGCTTTGGAATTTAGAGTATGCTTTGCAGCTTCAAGAGGCCTTCACACAAGAAGGAAAGGCAGAGGATGTGAATCCGGGTGTTCCGGCCCCGGCCCCAGCCTCAGTCCCAGTCCCTGCCCCGGCCCCAATCCCGGCAGCGGCTGCTCCTGCATCCACTATTGCCTTAAATGAGGATGTCCCTAATCCGGAAGGAAATAACCGTCCGGCTGAAGCCAGAGCAATTGATGACCATTCTGGAACTTTGCAGTTTGCTAAGTTTAGCCTTAATGGCAGATGA	2595	0.489	MAVRLAVIIFLALASTITPPCPTSAAFFLPRDNYLIDCGSDTGTTLPDGRTFKSDPESNTYLEANDQNKVSIENGNNNNPNLPNPLYSTARIFMQEAKYSFHLIQPGYHWIRLYFYPIKNNTFDLQKATFSVNAQKYVLLHNFNVNNNDKPILKEYLINANDPIFTLSFTPMKNSAAFINAIEIVSVPDKVLFDSGSNLFRVGDYSGLFSYAFQPVYRINNGGPAVTASSDTLGRNWENDEPYITVKNAAMDVVLPPNTIKYPADNPNISPIIAPPTVYASATEMSNETAVDQPNFNITWKFDVDTSFSYLVRLHFCDIVSKSLNELYFNVYINEKTAIPTLDLSSITQALATPYYRDFVVNASLMTQEGIKIQVGASLARGGSGNAIMNGIEILKMSNSLDSLDGQFGLDGSSGGISYRGAVAGVGFAMMFGAFVGLGAMVIRWHRRPQDWQKRNSFSSWLLPVLAGDSTFMSKNGSGKSNFSSMGMGLGRFFSFAELQEATKNFDKANIIGVGGFGNVYSGVIDEGTQVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSLIGYCDENDEMILVYEYMPNGHFRDHLYGKNMVGPPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLLDKIIDPNLVGTINPESLKKYADAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQEGKAEDVNPGVPAPAPASVPVPAPAPIPAAAAPASTIALNEDVPNPEGNNRPAEARAIDDHSGTLQFAKFSLNGR	864

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120851g00023	864	FunFam	receptor-like protein kinase FERONIA	470	581	-	-
	Stsc120851g00023	864	MobiDBLite	consensus disorder prediction	825	851	-	-
	Stsc120851g00023	864	FunFam	Receptor-like protein kinase FERONIA	582	795	-	-
	Stsc120851g00023	864	FunFam	Receptor-like protein kinase FERONIA	212	399	-	-
	Stsc120851g00023	864	SUPERFAMILY	Protein kinase-like (PK-like)	492	775	IPR011009	-
	Stsc120851g00023	864	Pfam	Protein tyrosine and serine/threonine kinase	510	706	IPR001245	GO:0004672\|GO:0006468
	Stsc120851g00023	864	Gene3D	Transferase(Phosphotransferase) domain 1	582	797	-	-
	Stsc120851g00023	864	Gene3D	Phosphorylase Kinase; domain 1	471	581	-	-
	Stsc120851g00023	864	PANTHER	OS07G0166700 PROTEIN	492	784	IPR045272	GO:0004714\|GO:0006468
	Stsc120851g00023	864	SMART	serkin_6	506	780	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120851g00023	864	ProSitePatterns	Protein kinases ATP-binding region signature.	512	534	IPR017441	GO:0005524
	Stsc120851g00023	864	ProSiteProfiles	Protein kinase domain profile.	506	780	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120851g00023	864	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	628	640	IPR008271	GO:0004672\|GO:0006468
	Stsc120851g00023	864	FunFam	Putative receptor-like protein kinase	33	188	-	-
	Stsc120851g00023	864	Gene3D	-	213	399	-	-
	Stsc120851g00023	864	Gene3D	-	33	187	-	-
	Stsc120851g00023	864	Pfam	Malectin-like domain	36	396	IPR024788	-
	Stsc120851g00023	864	CDD	STKc_IRAK	512	778	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120851g00023	Stsc-Chr120851	222715	225408	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120851g00023	28	864	Receptor kinase-like Gene Family	AT4G39110	65.284	0.0	1120

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Stsc120851g00023		Malectin_like	9.6e-34	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120851g00023	-		-	tpra:123893803	1269.22