Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120851g00014 ATGCAATCCCTTGCCAAGGTTTCGACACCTCGGAAAGTTGTACTGTCTGGAACTTTATATCAGAATCACGTGCAGGAGGTGTTTAACATCTTGGATCTGGTGCGGCCGCCTAGATTTATAAACATGGAAACTTCTAGGCCTATTGTCAAGCGCATTAAAAGCAGAGTGTATGTATCTGGTGTTGGAAATAATTTCTGTGATTTAGTTGAAAATACTTTGCAGAACGATAAGGATTTCAAAACAAAGGTGAACGTCATTCAAGATTTGCGTGAGATGACAAGCAAGGTGCTTCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCAGGTCTGGTTGATTTCACAGTGGTGCTCAACCTTACCTCTAGACAGAAGGATGAAGTTGAGAAATTGAAGAGGCATAATTCCAGGAAGTTCAAAATATCTTCTGTTGGAAGTGCTACTTATCTTCATCCTAAGTTGAAACCCGTTGCTGAAAATTGCAGTGAGAACTCCATATCTGATAACATCATCGATAACTTGATTGATAAACTAGATGTGAAAGATGGTGTCAAGTCAAAATTCTTTCGAAACATGCTCAAAATGTGTGAGTCTGCTGGGGAGAAGCTTCTGGTTTTCAGTCAATATCTCCTACCTCTGAAATATTTGGAAAGGTTAGCAGCAAAATGGAATGGATGGAGCCTTAACAAAGAAATTTTCGTCATCTCAGGAGAATCAAGCCCTGAACAACGGGAGTTCTCGATGGAAAAGTTCAACAGCTCAGCTGATGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGGGAGGGCATATCACTGGTTGGGGCATCCCGAGTAATTATTCTGGATGTTCATCTCAATCCGTCAGTTACTCGCCAAGCTATTGGCCGTGCATTCCGACCAGGTCAGACAAAGAAAGTCTTTGTATATCGGTTGGTGGCAGCAGATTCTCCGGAAGAGGAAGATCATACTACTTGTTTCAAGAAGGAATTGATTTCAAAGATGTGGTTTGAATGGAACGAGTATTGTGGTGACAGAGCTTTTGAAATGGAGAACGTTCCAGTGAAAGAATCTGGTGATCTCTTCCTCGAAAGTCATTCATTAGCTGAAGATGTTAAAGCTCTATATAGAAGGTAG 1137 0.4116 MQSLAKVSTPRKVVLSGTLYQNHVQEVFNILDLVRPPRFINMETSRPIVKRIKSRVYVSGVGNNFCDLVENTLQNDKDFKTKVNVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVVLNLTSRQKDEVEKLKRHNSRKFKISSVGSATYLHPKLKPVAENCSENSISDNIIDNLIDKLDVKDGVKSKFFRNMLKMCESAGEKLLVFSQYLLPLKYLERLAAKWNGWSLNKEIFVISGESSPEQREFSMEKFNSSADAKVFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLVAADSPEEEDHTTCFKKELISKMWFEWNEYCGDRAFEMENVPVKESGDLFLESHSLAEDVKALYRR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120851g00014 378 Pfam Helicase conserved C-terminal domain 191 301 IPR001650 -
Stsc120851g00014 378 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 362 IPR027417 -
Stsc120851g00014 378 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 377 IPR044567 GO:0080188
Stsc120851g00014 378 CDD SF2_C_SNF 176 313 - -
Stsc120851g00014 378 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 188 361 IPR001650 -
Stsc120851g00014 378 SMART helicmild6 217 302 IPR001650 -
Stsc120851g00014 378 Gene3D - 1 59 IPR038718 -
Stsc120851g00014 378 Gene3D - 109 370 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120851g00014 Stsc-Chr120851 118217 122888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120851g00014 180 320 RAD5 or RAD16-like Gene Family AT5G43530 34.247 6.48e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120851g00014 K10875 - gmx:100780454 590.112