Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120851g00012 ATGGGGAAGAAAAGCAAATTGAAGGAACATAGTGGCAAAGAGCATTGTTCCTCAACTCTTTTTGTATCCAACCTGCCATACTCTTTTTCCAACTCCCAGCTTGAGGAGACATTCAGCGAGATTGGACCTGTCAGGCGTTGCTTCATGGTCACTCAGAAGGGGTCAACCCAACGTCGTGGTTTTGGTTATGTTCAATTTGCCGTCGAGGAAGATGCTAACCGTGCTATTGAACTGAAGAATGGTTCATCAGTTGGTGGCCGGAAAATTGCGGTGAAGCATGCAATGCCACGTCCTTCCCGTGAAGAACGAAAATCAAAACCAATTCAAGTTGGTAAGACAGAAGATGCCACAAAGTCAAAAAATGATGATAAAGACAGCAGAGATTCTGCAGAAGAAAAAGATGTTTCAATTTCAAAGGAAGAAGATGTACAAGTTTCAAATAAACAAAGAAGCTCAAAGAAGCCCATGGAAATGAGAAAAGCAACTCTTTGTAGCGATATAGCAGATGATGGAGGTGGCTCAGAAAAGCAGAGGGTCGCAAGAACTGTTATATTTGGTAATCTCATAAATTCCGATATGGCTGAAGCTGTTCACTGTCAAACCAAAGAGATTGGCACTGTGTGTTCTATTAAGTACCCCCTTCCAAGGAAAGATATTGAACGGCAAGGTCTCCTGCAAGATGGCTGTGCTCTGGATGCTTCAGCTGTAATCTTTACAAGTGTAAAGTCAGCTCGAGCCGCTGTTATGGCATTACATAAAAAGGAGATCAAAGGGGGAACTGTTTGGGCACGGCAACTGGGTGGAGAGGGTGCCAAGACTCACAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCTGGTGAAAAGGAAATAAGGGATGTGTTTTCCTCTGCAGGTTTTGTGTGGGATGTATTTATTCCACACAAGTCAGATACAGGACTCTCCAAGGGTTTTGCATTTGTAAAGTTCACCTGCAAGCAAGATGCGGAAAATGCCATTCAAAAGTTTAATGGATCGAAATTTGCAAAACGGCTCATAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAATAGTGATACAAATGCCACTGAAAAAGAACAAGAGGCAAATGATGGAGATAGTAGTGCCACTGACGATGATGTTGAGCATATTGGTGACGATAAATCTGCTGATGACGATGATAGTGATGAAGACAACCCTAGTTCCATGGAGGAGGAAGGTGTTCCTCCTGAAGTTGATTTTGATACGGAAGCGGATCTTACCAGGAAGGTTCTTAACAACTTGATTTCATCCTCTGCAAAAGTAGCATCAACGCAGAATGATTCTATGTTGCCCAATGAAGATGAAGAGTCAGAGTCTGATGAAGATGGAGATAATAAAGCAAATAATGAGTCAGAAAACGTTTCTGGTGTTTCTAATCCTGAAATTTCCAGCATAAACAATTTATCAGATACTAAGCAAACAGAAGATGATGATTTGCAGCGAACAGTTTTCATAAATAATCTTCCTTTTGATTGTGATAATGAGGAAGTGAAGGAACGGTTTTCTGGATTTGGAGAAGTAGAATATTTTGTTCCAGTTCTACACCAAGTCACCAAACGTCCAAGGGGAACTGGTTTTCTTAAGTTTAAAACCACAGAAGCAGCTAATGATGCAATCAAAGCATCAAATGCAGCTTCAGGTATTTTGCTGAAAGGTAGACCATTGAAAGTTTTGAAGGCTTTGGATAAGAAATCAGCCCATAACAAGGAACTTGAGAAGGCAAAGAATGAGGTTCATGATCATCGCAATCTTTATTTGGCAAAGGAAGGACTCATTCTGGAGGGAACTCCAGCAGCCGAAGGAGTTTCAGCCAGTGATATGTTAAAACGCCAACAGTTAGAAAAGAAAAAGAAGACAAAGCTTCAGTCACCAAATTTTCATGTTTCAAGAACAAGACTTATCATTTACAATGTACCAAAGTCAATGTCTGAAAAAGAACTTAAGAAACTTTGCATTGATGCAGTCATCTATAGAGCTACCAAGCAAAAACCTATGATTCGGCAGATTAAGTTCTTGAAAGATGTTAAGAAAGGGGGAAAGGTTGTCCAGGAACATTTTTCACGTGGAGTTGCTTTTGTTGAATTTTCAGAGCATCAACATGCCCTTGTGGCTCTGAGAGTTCTCAACAATAATCCTGAAACTTTTGGTCCTGAACACCGGCCAATTGTGGAGTTCGCTCTCGATAATGTTCAAACATTGAAACTCCGGAAGTCAAGGGAACAATTCCAAAAGCAAGCCTCTCGTGATGACATCAATGCTAGTGAAAATGGTGTACCCGGCAAAAAAGTTGACACACACATGAAGGACAGGAAACGGAAAACTCGGGAGAGTGGCAAACCAATTAATGATTTGGATACAAATGGTGAATCAGGTGTTACAGTGGCAAATGGGAACACCCCAGAAGGACTCAAATTCAAGAAACAGAAAGGCAAAAAAGGTAGAAGGGTGGAAGAATCATCAGAGAAAGATGCCTTGGCCATGAAACCAAAGAACAACCAAGATGGACGGAGCCGTGTTCGTGCAGAACTTGAAGGTCAAAACCCCTCTACTGACACCAAGAAAGCAACATCAGGAAACAAGGTAGATGTTGGATCAAGAAAAAGGAAGATGCAAAACCAGGAACAAGGAGAGCCAAAGTTTTCTAAGAAACGGCCTAAAAAGAATAAAGAATCAGTAGGGAAAGACGTGGTAGACAAGCTTGACATGCTTATAGAACAATATAAATCGAAGTTCTCACACAAAGGTTCCCAAGGGAATGACAGTGACAAAAAACCTTCCAAACAGCTTAGAAAGTGGTTTGATGTATAG 2856 0.4097 MGKKSKLKEHSGKEHCSSTLFVSNLPYSFSNSQLEETFSEIGPVRRCFMVTQKGSTQRRGFGYVQFAVEEDANRAIELKNGSSVGGRKIAVKHAMPRPSREERKSKPIQVGKTEDATKSKNDDKDSRDSAEEKDVSISKEEDVQVSNKQRSSKKPMEMRKATLCSDIADDGGGSEKQRVARTVIFGNLINSDMAEAVHCQTKEIGTVCSIKYPLPRKDIERQGLLQDGCALDASAVIFTSVKSARAAVMALHKKEIKGGTVWARQLGGEGAKTHKWKLIVRNLPFKAGEKEIRDVFSSAGFVWDVFIPHKSDTGLSKGFAFVKFTCKQDAENAIQKFNGSKFAKRLIAVDWAVPKKIFNSDTNATEKEQEANDGDSSATDDDVEHIGDDKSADDDDSDEDNPSSMEEEGVPPEVDFDTEADLTRKVLNNLISSSAKVASTQNDSMLPNEDEESESDEDGDNKANNESENVSGVSNPEISSINNLSDTKQTEDDDLQRTVFINNLPFDCDNEEVKERFSGFGEVEYFVPVLHQVTKRPRGTGFLKFKTTEAANDAIKASNAASGILLKGRPLKVLKALDKKSAHNKELEKAKNEVHDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQQLEKKKKTKLQSPNFHVSRTRLIIYNVPKSMSEKELKKLCIDAVIYRATKQKPMIRQIKFLKDVKKGGKVVQEHFSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKSREQFQKQASRDDINASENGVPGKKVDTHMKDRKRKTRESGKPINDLDTNGESGVTVANGNTPEGLKFKKQKGKKGRRVEESSEKDALAMKPKNNQDGRSRVRAELEGQNPSTDTKKATSGNKVDVGSRKRKMQNQEQGEPKFSKKRPKKNKESVGKDVVDKLDMLIEQYKSKFSHKGSQGNDSDKKPSKQLRKWFDV 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 777 798 - -
Stsc120851g00012 951 Gene3D - 262 387 IPR012677 -
Stsc120851g00012 951 SUPERFAMILY RNA-binding domain, RBD 18 262 IPR035979 GO:0003676
Stsc120851g00012 951 SUPERFAMILY RNA-binding domain, RBD 497 726 IPR035979 GO:0003676
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 387 415 - -
Stsc120851g00012 951 FunFam RNA-binding motif protein 28 646 742 - -
Stsc120851g00012 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 647 756 IPR000504 GO:0003723
Stsc120851g00012 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 497 578 IPR000504 GO:0003723
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 828 857 - -
Stsc120851g00012 951 CDD RRM1_RBM28_like 19 97 - -
Stsc120851g00012 951 Coils Coil 573 600 - -
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 799 813 - -
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 876 924 - -
Stsc120851g00012 951 SUPERFAMILY RNA-binding domain, RBD 273 356 IPR035979 GO:0003676
Stsc120851g00012 951 Gene3D - 2 108 IPR012677 -
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 437 492 - -
Stsc120851g00012 951 Gene3D - 483 586 IPR012677 -
Stsc120851g00012 951 CDD RRM3_RBM28_like 497 576 - -
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 859 875 - -
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 361 386 - -
Stsc120851g00012 951 SMART rrm2_1 498 574 IPR003954 GO:0003676
Stsc120851g00012 951 SMART rrm2_1 19 92 IPR003954 GO:0003676
Stsc120851g00012 951 SMART rrm2_1 277 350 IPR003954 GO:0003676
Stsc120851g00012 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Stsc120851g00012 951 SMART rrm1_1 498 574 IPR000504 GO:0003723
Stsc120851g00012 951 SMART rrm1_1 648 740 IPR000504 GO:0003723
Stsc120851g00012 951 SMART rrm1_1 277 350 IPR000504 GO:0003723
Stsc120851g00012 951 SMART rrm1_1 19 92 IPR000504 GO:0003723
Stsc120851g00012 951 Gene3D - 646 742 IPR012677 -
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 447 461 - -
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 931 951 - -
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 361 415 - -
Stsc120851g00012 951 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 499 559 IPR000504 GO:0003723
Stsc120851g00012 951 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Stsc120851g00012 951 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 347 IPR000504 GO:0003723
Stsc120851g00012 951 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 354 IPR000504 GO:0003723
Stsc120851g00012 951 FunFam - 2 130 - -
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 465 486 - -
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 94 159 - -
Stsc120851g00012 951 CDD RRM2_RBM28_like 277 353 - -
Stsc120851g00012 951 CDD RRM4_RBM28_like 647 745 - -
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 755 951 - -
Stsc120851g00012 951 MobiDBLite consensus disorder prediction 87 159 - -
Stsc120851g00012 951 PANTHER RNA-BINDING MOTIF PROTEIN 14B 15 950 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120851g00012 Stsc-Chr120851 75230 82154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120851g00012 22 99 Eukaryotic Initiation Factors Gene Family AT3G11400 35.897 2.03e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120851g00012 K14573 - gmx:100794821 1328.15