Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120850g00033 ATGGGAGGCACCAGGTTCTTCGGAGCAGCTGCTGACAGGAGGCTCAGGCCACACCACCACCACCACAACGCCGCCACCAACTGCCACCACCACCACCAAGCACTTAAATGTCCCCGTTGTGACTCACTCAACACAAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCTCGCCACTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCTGTCGGCGGAGGTTGCCGCAAGTCCAAGCGTTCCACCAGCGACAACAAGACCTCTAAATCCACCAAAACTAATACAAATAATAGTAGTCCCAGCGCCACCGCGACTTCCTCCGCAGAAACACCGCCGCAAACGACGTCGTCTCAGCCTCCACCGACGACGGACCAGAACACAAATTCTCACTCCAGCAGCGAAAGCTCTAACCTCACCGCGGCGGCCACCACCGGCACGATGGAGCTGAACTCTGATTCTTCCAAGTTGTTGATCCATGACAACAATAACAACGCTTCCTCGAACCCTAATTTGGAGAGTGGTGGTATCTTCTCTGAGATAGGGACGTTCACGAGCTTGATGGCTTCTTCATCTTCGAACAACGATGCATTGGCGTTTGGATTTGGAGGTGGTGGTACTGGTATTGTTCCTGATACGACGTCGTTTCAGTGGCATCATCAACAGCAGAAGTTGCCGGAGAATCTGAACGACGGTGGTGGTGGTGGTGGGAGTTTGCTGGATCATCATGGACAGGGGAGCACGGTAACCGTTGATTTGTCGGCACTTGAGAGCAAGGCGGGACACGGTGGATTTGGAGCGTTGGATTGGCAAAGTGGCGTGGATCAAGGTTTGTTTGATCTCCCCAACACCGTTGATCATGCTTACTGGAGTCAAACTCAATGGTCTGATCACGACAGTTCTAATCTCTTTCATCTCCCCTGA 948 0.5338 MGGTRFFGAAADRRLRPHHHHHNAATNCHHHHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSTSDNKTSKSTKTNTNNSSPSATATSSAETPPQTTSSQPPPTTDQNTNSHSSSESSNLTAAATTGTMELNSDSSKLLIHDNNNNASSNPNLESGGIFSEIGTFTSLMASSSSNNDALAFGFGGGGTGIVPDTTSFQWHHQQQKLPENLNDGGGGGGSLLDHHGQGSTVTVDLSALESKAGHGGFGALDWQSGVDQGLFDLPNTVDHAYWSQTQWSDHDSSNLFHLP 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120850g00033 315 ProSiteProfiles Zinc finger Dof-type profile. 35 89 IPR003851 GO:0003677|GO:0006355
Stsc120850g00033 315 MobiDBLite consensus disorder prediction 79 150 - -
Stsc120850g00033 315 ProSitePatterns Zinc finger Dof-type signature. 37 73 IPR003851 GO:0003677|GO:0006355
Stsc120850g00033 315 Pfam Dof domain, zinc finger 33 89 IPR003851 GO:0003677|GO:0006355
Stsc120850g00033 315 MobiDBLite consensus disorder prediction 96 150 - -
Stsc120850g00033 315 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 198 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120850g00033 Stsc-Chr120850 233457 238658 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120850g00033 12 315 C2C2-Dof Transcription Factor Family AT5G60850 41.479 4.18e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc120850g00033 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120850g00033 - - adu:107468949 424.091