Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120850g00032 ATGCAGGAGATACATTCAATGGGAGGCACCAGGTTCTTCGGAGCAGCTGCTGACAGGAGGCTCAGGCCACACCACCACCACCACAACGCCGCCACCAACTGCCACCACCACCACCAAGCACTTAAATGTCCCCGTTGTGACTCACTCAACACAAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCTCGCCACTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCTGTCGGCGGAGGTTGCCGCAAGTCCAAGCGTTCCACCAGCGACAACAAGACCTCTAAATCCACCAAAACTAATACAAATAATAGTAGTCCCAGCGCCACCGCGACTTCCTCCGCAGAAACACCGCCGCAAACGACGTCGTCTCAGCCTCCACCGACGACGGACCAGAACACAAATTCTCACTCCAGCAGCGAAAGCTCTAACCTCACCGCGGCGGCCACCACCGGCACGATGGAGCTGAACTCTGATTCTTCCAAGTTGTTGATCCATGACAACAATAACAACGCTTCCTCGAACCCTAATTTGGAGAGTGGTGGTATCTTCTCTGAGATAGGGACGTTCACGAGCTTGATGGCTTCTTCATCTTCGAACAACGATGCATTGGCGTTTGGATTTGGAGGTGGTGGTACTGGTATTGTTCCTGATACGACGTCGTTTCAGTGGCATCATCAACAGCAGAAGTTGCCGGAGAATCTGAACGACGGTGGTGGTGGTGGTGGGAGTTTGCTGGATCATCATGGACAGGGGAGCACGGTAACCGTTGATTTGTCGGCACTTGAGAGCAAGGCGGGACACGGTGGATTTGGAGCGTTGGATTGGCAAAGTGGCGTGGATCAAGGTTTGTTTGATCTCCCCAACACCGTTGATCATGCTTACTGGAGTCAAACTCAATGGTCTGATCACGACAGTTCTAATCTCTTTCATCTCCCCTGA 966 0.5311 MQEIHSMGGTRFFGAAADRRLRPHHHHHNAATNCHHHHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSTSDNKTSKSTKTNTNNSSPSATATSSAETPPQTTSSQPPPTTDQNTNSHSSSESSNLTAAATTGTMELNSDSSKLLIHDNNNNASSNPNLESGGIFSEIGTFTSLMASSSSNNDALAFGFGGGGTGIVPDTTSFQWHHQQQKLPENLNDGGGGGGSLLDHHGQGSTVTVDLSALESKAGHGGFGALDWQSGVDQGLFDLPNTVDHAYWSQTQWSDHDSSNLFHLP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120850g00032 321 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Stsc120850g00032 321 MobiDBLite consensus disorder prediction 85 156 - -
Stsc120850g00032 321 MobiDBLite consensus disorder prediction 102 156 - -
Stsc120850g00032 321 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Stsc120850g00032 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 31 204 IPR045174 GO:0003700|GO:0006355
Stsc120850g00032 321 Pfam Dof domain, zinc finger 39 95 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120850g00032 Stsc-Chr120850 233457 238658 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120850g00032 18 321 C2C2-Dof Transcription Factor Family AT5G60850 41.479 5.65e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc120850g00032 zf-Dof 3.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120850g00032 - - adu:107468949 436.032