Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120850g00028 ATGCAGGAGATACATTCAATGGGAGGCACAAGGTTCTTCGGAGCCGCCGCTGACAGGACCCTCAGGCCACACCACCACCACCACAACGCCGCCACCAACTGCCACCACCACCACCAAGCACTTAAATGTCCCCGTTGTGACTCACTCAACACAAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCTCGCCACTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCTGTCGGCGGAGGTTGCCGCAAGTCCAAGCGTTCCACCAGCGACAGCAGGACCTCTAAAACCACCAAAAGTAATAATAATAGTAGCGCCACCGCGACCTCCTCCGCGGAAACACCGCCGCAAACGACGTCGTCTCAGCCTCCACCGACGGACCAGAACGCAAATTCTCACTCCAGCAGCGAGAGCTCTAACCTCACCGCGTCGGCGGCGGCGGCCACCACCGGCACGACGGAGCTGAACTCTGATTCTTCCAAGTTGTTGATCCACGAGAATAACAGCAACAACAACAACAACGCATCCTCGAACCCTAATTTGGAGAGCGGCGGTATCTTCTCTGAAATAGGGACGTTCACGAGCTTGATGGCTTCTTCATCTTCGAACAACGATGCATTGGCGTTTGGATTTGGAGGTGGTGGTACTGGTATTGTTCCTGATACGACGTCGTTTCAGTGGCATCATCAACAGCAGAAGTTGCCGGAGAATCTGAACGACGGTGGTGGTGGTGGTGGGAGTTTGCTGGATCATCATGGACAGGGGAGCACGGTAACCGTTGATTTGTCGGCACTTGAGAGCAAGGCGGGACACGGTGGATTTGGAGCGTTGGATTGGCAAAGTGGCGTGGATCAAGGTTTGTTTGATCTCCCCAACACCGTTGATCATGCTTACTGGAGTCAAACTCAATGGTCTGATCACGACAGTTCTAATCTCTTTCATCTCCCCTGA 975 0.5426 MQEIHSMGGTRFFGAAADRTLRPHHHHHNAATNCHHHHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSTSDSRTSKTTKSNNNSSATATSSAETPPQTTSSQPPPTDQNANSHSSSESSNLTASAAAATTGTTELNSDSSKLLIHENNSNNNNNASSNPNLESGGIFSEIGTFTSLMASSSSNNDALAFGFGGGGTGIVPDTTSFQWHHQQQKLPENLNDGGGGGGSLLDHHGQGSTVTVDLSALESKAGHGGFGALDWQSGVDQGLFDLPNTVDHAYWSQTQWSDHDSSNLFHLP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120850g00028 324 MobiDBLite consensus disorder prediction 242 261 - -
Stsc120850g00028 324 Pfam Dof domain, zinc finger 39 95 IPR003851 GO:0003677|GO:0006355
Stsc120850g00028 324 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Stsc120850g00028 324 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Stsc120850g00028 324 MobiDBLite consensus disorder prediction 102 166 - -
Stsc120850g00028 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 31 196 IPR045174 GO:0003700|GO:0006355
Stsc120850g00028 324 MobiDBLite consensus disorder prediction 85 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120850g00028 Stsc-Chr120850 214334 215952 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120850g00028 18 324 C2C2-Dof Transcription Factor Family AT5G60850 40.952 3.09e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc120850g00028 zf-Dof 3.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120850g00028 - - adu:107468949 434.106