Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120850g00025 ATGATGGAGCTTCCTCAAGCGCGGTCATTCGGAACCGAAGGAAGAAAACCTACGCATGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGATCCAAGACCACCTTCTCAAGGAAGCTACCTTAAGACCCATGATTTCTTGAGAGTTGAAACGAAAGCCAACACAAAGGAAGAAGCCTCGGATGAAATATCATCGACAGTTCAAAAGCTACCACCTGCAGCACCACAACCGCCACCTTCTGTAGAGCACCAGCACCTCTTACCTGGAGGGATTGGGACTTACAGTATTAGCCACATTTCTTATTTTAATAATAATAATAATAATAATAATCAAAGGGTTCCAAAGCCTGAGGCACCCCTTTTCACTGTGCGTCAAGCAACTAGCATGGATAGAAACGATGAAAACTCCAACTGCAGTTCTTATACGTCAAGTGGTTTCACTTTATGGGATGAGTCTGCAGTTAAGAAGGGAAAGACAGGGAAGGAGAATAATACTGTGGGCGACAAGCTCATTCCAGGAGATACACAGTCTGCGAAGCAAGGCCATTGGACTTCCACGGAGGGAACGCCACAGTCATTTTCTAATAATCGTCACAACAACAGCTTCAACTCTCGCTCCTCCTCTCAGACAACGGGACACAAGAATCAGAGTTTCATAGAAATGATGAAATCCGCAAAAGATTGTGCCCAGGATGAAGAGCTAGACAATGAAGAATCATTTTTCCTTAAGAAAGAATGCTCGTCGAATCCTGAAAGAGCAGAATTAAGGGTGAAAGTTGATGGAAAGAGTAGTGATCAAAAGCCAAACACACCAAGGTCAAAACATTCAGCAACAGAACAGCGGAGGAGGAGCAAAATTAATGACAGATTCCAGATGCTACGAGAGCTAATTCCACACAGTGACCAAAAGAGAGACAAAGCATCTTTTTTGCTAGAGGTCATTGAGTATATCCATTTCTTACAAGAGAAGGTCCATAAGTATGAAGGTTCATTCCAAGGGTGGAACCACGAGACAGAAAAACTGATGCCATGGAGGAACAATGACAAGCCAGCAGAGAGTTTTGAAGCTCGTGGCACAAATAGCGGGTCAGGTCCATCTCCAACATTGTTCTTTGCTTCAAAGATTGATGAAAAAAATATCACTCTCTCCGCACCAATTACTGGTAGTTCTCAGAAAGTAGAACCTGGCTTGAACACAGCAACTACCTTCAAAAACATGGATCATCATCCTGGAATAACAAACAGCACTTTCCCGATTCCTATTTCTTCACCTCCAAACTTCTTCCCTCCTAGGAAAACCGTTGGTCTTGGTGAAATGCCTCATGTCACACATAGACTGCCGTCTGATGCAGGGAATGGCCTATATCAACCTTCTTCAGTGGAGTGTCAGACTGTCACTGCTACTAATGAGAAGCTGAAAGAGAAAGAGCTCACTATTGAAGGTGGTGCCATTAGCATATCAAGTGTATACTCAAAAGGGTTGTTGGATACACTTACACATGCACTACAGAGTTCGGGAGTGGATTTATCACAGGCTAGCATCTCAGTGCAAATTGAGCTTGGTAAGCAAGCAAACATAATCAGACCAACTCTGCCAATGTCAATGTGTGGTGTTAAGGATGATGAAGTTCCTTTAAACAATCAAAGGATGATGCGCTCTAGAGTTGCTTCCTCTGAGAAATCTGACCAACCAGTAAAGAAGCTAAAAACTTGCAAAACCTAA 1728 0.4306 MMELPQARSFGTEGRKPTHDFLSLYSNSTAQQDPRPPSQGSYLKTHDFLRVETKANTKEEASDEISSTVQKLPPAAPQPPPSVEHQHLLPGGIGTYSISHISYFNNNNNNNNQRVPKPEAPLFTVRQATSMDRNDENSNCSSYTSSGFTLWDESAVKKGKTGKENNTVGDKLIPGDTQSAKQGHWTSTEGTPQSFSNNRHNNSFNSRSSSQTTGHKNQSFIEMMKSAKDCAQDEELDNEESFFLKKECSSNPERAELRVKVDGKSSDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNHETEKLMPWRNNDKPAESFEARGTNSGSGPSPTLFFASKIDEKNITLSAPITGSSQKVEPGLNTATTFKNMDHHPGITNSTFPIPISSPPNFFPPRKTVGLGEMPHVTHRLPSDAGNGLYQPSSVECQTVTATNEKLKEKELTIEGGAISISSVYSKGLLDTLTHALQSSGVDLSQASISVQIELGKQANIIRPTLPMSMCGVKDDEVPLNNQRMMRSRVASSEKSDQPVKKLKTCKT 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120850g00025 575 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 272 322 IPR011598 GO:0046983
Stsc120850g00025 575 SMART finulus 278 328 IPR011598 GO:0046983
Stsc120850g00025 575 MobiDBLite consensus disorder prediction 158 216 - -
Stsc120850g00025 575 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 343 IPR036638 GO:0046983
Stsc120850g00025 575 MobiDBLite consensus disorder prediction 21 39 - -
Stsc120850g00025 575 MobiDBLite consensus disorder prediction 1 44 - -
Stsc120850g00025 575 MobiDBLite consensus disorder prediction 179 216 - -
Stsc120850g00025 575 FunFam BHLH domain class transcription factor 270 342 - -
Stsc120850g00025 575 MobiDBLite consensus disorder prediction 255 288 - -
Stsc120850g00025 575 Pfam Helix-loop-helix DNA-binding domain 274 323 IPR011598 GO:0046983
Stsc120850g00025 575 MobiDBLite consensus disorder prediction 56 83 - -
Stsc120850g00025 575 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 572 IPR044295 GO:0003700|GO:0006351|GO:0046983
Stsc120850g00025 575 MobiDBLite consensus disorder prediction 557 575 - -
Stsc120850g00025 575 MobiDBLite consensus disorder prediction 555 575 - -
Stsc120850g00025 575 Gene3D - 270 344 IPR036638 GO:0046983
Stsc120850g00025 575 CDD bHLH_AtBIM_like 271 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120850g00025 Stsc-Chr120850 173186 179865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120850g00025 2 572 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 46.010 6.30e-118 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120850g00025 HLH 5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120850g00025 - - adu:107468970 1016.14