Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120850g00024 ATGTCAAGCGGAAGCAGCAGCGGCTTCGGCGGCGCCGACTCTGAGTCGCCTCCAAACAAACGCCTCAAAACCGAAGAAGCATCGAAGAAAGTGGACGGTGGTGGAGACGACGAAAACCAGGGTGTATGGTGCGGGATCTGCTACTCGGAGCGCGGCGCATCGATCGCCGGAGAAATCGACTCCTGCAGCCACTACTTCTGCTTCGTATGCATCATGGAGTGGTCCAAGCACGAGTCCCGATGCCCTATCTGCCGCCAGAGATTCTCCAACGTTCGCCGCCTCCCCAAGCATGGCGTCTTCTCTTCTTCTCGTGACATTAAGATCCCTCTCCGTGATCAGGTTTATCATCCTTACGGGAATATGAGCACTGGTTCTACTAATTCTCATACTGAGGCCAAATGCATTGTCTGTCACCGTGTGGAAGATGAAAATCTTATGTTAATTTGTGATCTTTGCGATGCTTCTTCTCATACATACTGTGTTGGCCTCGGCTACACTGTCCCCGAAGGGGATTGGTTTTGTTATGACTGTGCTATTGCCAGGGAGACCAATGAGCGGGAAGACTTAGAGCAGCAGAATGTTGACCAAAGTGGGGCGAGAACTGCAATACCATCTCCTTTACAACAATGCCCTTTCCCTCGTCCTAGCATTCCGTCAGCTGATAGATTAAGTAGATACAGAGGGAAGAGGCCTCTGTCGAATCCCCAGCAGGTGCAGCGTAATATTCAAGCGCTCCGTGATAATTGGAATGCACTGAGGAGTGGTTCCATGACGTTTGGTTCTGGTTCCGTTCAAACCAGTCGCAATCAAGATTCTGGTTCTGCTTCACGTTGCAGACCAGTCGAACAACATTCTAATTCTATGAGTTTGGCAAGCCAAGGTTCCAGTTCCGGTAATGTTTCACGAGGCAGATCAAATGAACAGCATTATAATTCTATGGCTTTGGCAATCGGAGGTTCTGGTTCAGCTGTGCTTGGCAATTCAGACAGGCAGCATTCTAACTCTATGGCTTTGCCAAACCGAGGTTCTGGTTCCATTTTGCACGGCAGATCAGACACGGCTTACCCAAGAATTGAGCGCCCGAATGTCCAAGATGGTCCATCTAGAGGCACAGTGAATGAGAGGGGGATGAAAGATGTCAATAAGGCTTGGAAAATGATGGAGAAGGCAAAGAAGATGCAAGGGACTCATCGAAGAACCAGCAGAAAGTAG 1212 0.4959 MSSGSSSGFGGADSESPPNKRLKTEEASKKVDGGGDDENQGVWCGICYSERGASIAGEIDSCSHYFCFVCIMEWSKHESRCPICRQRFSNVRRLPKHGVFSSSRDIKIPLRDQVYHPYGNMSTGSTNSHTEAKCIVCHRVEDENLMLICDLCDASSHTYCVGLGYTVPEGDWFCYDCAIARETNEREDLEQQNVDQSGARTAIPSPLQQCPFPRPSIPSADRLSRYRGKRPLSNPQQVQRNIQALRDNWNALRSGSMTFGSGSVQTSRNQDSGSASRCRPVEQHSNSMSLASQGSSSGNVSRGRSNEQHYNSMALAIGGSGSAVLGNSDRQHSNSMALPNRGSGSILHGRSDTAYPRIERPNVQDGPSRGTVNERGMKDVNKAWKMMEKAKKMQGTHRRTSRK 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120850g00024 403 MobiDBLite consensus disorder prediction 324 351 - -
Stsc120850g00024 403 SMART ring_2 44 84 IPR001841 -
Stsc120850g00024 403 MobiDBLite consensus disorder prediction 324 341 - -
Stsc120850g00024 403 SUPERFAMILY FYVE/PHD zinc finger 126 179 IPR011011 -
Stsc120850g00024 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 203 IPR013083 -
Stsc120850g00024 403 SUPERFAMILY RING/U-box 38 98 - -
Stsc120850g00024 403 MobiDBLite consensus disorder prediction 186 239 - -
Stsc120850g00024 403 SMART PHD_3 133 178 IPR001965 -
Stsc120850g00024 403 MobiDBLite consensus disorder prediction 1 34 - -
Stsc120850g00024 403 Pfam Ring finger domain 44 85 IPR001841 -
Stsc120850g00024 403 MobiDBLite consensus disorder prediction 256 306 - -
Stsc120850g00024 403 Coils Coil 179 199 - -
Stsc120850g00024 403 MobiDBLite consensus disorder prediction 18 34 - -
Stsc120850g00024 403 PANTHER F18C1.6 PROTEIN 28 398 - -
Stsc120850g00024 403 ProSitePatterns Zinc finger RING-type signature. 62 71 IPR017907 -
Stsc120850g00024 403 Pfam PHD-finger 134 178 IPR019787 -
Stsc120850g00024 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 94 IPR013083 -
Stsc120850g00024 403 ProSiteProfiles Zinc finger RING-type profile. 44 85 IPR001841 -
Stsc120850g00024 403 ProSiteProfiles Zinc finger PHD-type profile. 131 180 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120850g00024 Stsc-Chr120850 155606 157341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120850g00024 131 181 C2H2 Transcription Factor Family AT3G01460 42.308 1.98e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc120850g00024 PHD 7.9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120850g00024 - - ahf:112709160 613.609