Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120850g00021 ATGGCAGATGTAACGTACCTTCTCCACCATCACCACCCTGAACACGACGACGACCCTCACCAAACCCTAACCCTACCGCCCTACTGGTCCCCTCAAGATTTCGATTTCTACGCCTCCGATCCCGAATTCCCCCAACAACCACAAAACAACCACCACCACCACCATCGCCACCACCACTTTCAACAATCTGGTTCATCATCCATTCTCAACAGAGAGAATCAGGTCAATTTCGTCATGGATTTGTTCCAGCAGCGTGTTGAGCAGTCACAGGTCATGGGACACCCTTTAAACGACGCCGTTTTCGGGAGCACCGATTTTGGGATTGAAATGGACGCTTTTACCCTCGATTTAGGGTTCCCTTCCGATAGGGACGCATGCAACCGTGCCAATGCCGCCGGAGGAGATTCTTCCGCCGGTGGTGTCGTCGTCGTCGACGACGACGATTTCTTCTTCGGGAGGAGGGTTTCCGGTTCCGATTCCGGCGACGCGGCGGCTTTCGAGAACTGCGTCAGCCTCATAGGGTTCGGATCGGACTCCGACGAGGAAGAAGACAACGGCGTTCTCCGAATCTGCGTGCATTCCGACGAGGAGTACAATTTGCACGACGAAAACGACGACGTTTCGAGTATTCCTCTGTGCTGGGACTCACTGCTGTTGGAAGATAACAGAGAGAACAACGACGATTTTGAGTGGGAGGAGGTTGATGGAAGGGTAGACGAGAGGGAAGTTCTAAGCATGCTCGCCGTCGAAGACGATAGATCCGCCTCGGTTTCCGTTTCACACGTCACCGGAATCGAAGAAGCCGAAGAAGAAGAAGAAGTTAACGTTTTTAGGGTTGGGGGAATGGAGAATTTGGAATGGGAAGTGTTGCTGAATGCAAACAATTTGGACACAATCACGAGCCCTGATTTGGATCACGATTCCGAACCCTACTTTGGTGATCATGATGATTATATTAACACTGCAGAGTATGAAATGATGTTTGGCCAATTCGCCGATAATGATAATCCGTTGAACGGTAGGCCTCCGGCTTCGGCTTCCGTCGTCCGGAGCCTGCCGTCAGTGGTGGTAACAAAGGATGACGTGGAAGGAAACAATGCGCTTTGTGCTGTTTGCAAAGATGAGTTTTGTGTTGGGGAGAATGTAAAGGCGTTGCCTTGTTCCCATCGTTATCATGGTGACTGCATTCTGCCATGGTTGGGGATTCGGAACACTTGCCCCGTCTGCCGCCATGAGTTCCCGACCGATGCATTATGA 1257 0.5147 MADVTYLLHHHHPEHDDDPHQTLTLPPYWSPQDFDFYASDPEFPQQPQNNHHHHHRHHHFQQSGSSSILNRENQVNFVMDLFQQRVEQSQVMGHPLNDAVFGSTDFGIEMDAFTLDLGFPSDRDACNRANAAGGDSSAGGVVVVDDDDFFFGRRVSGSDSGDAAAFENCVSLIGFGSDSDEEEDNGVLRICVHSDEEYNLHDENDDVSSIPLCWDSLLLEDNRENNDDFEWEEVDGRVDEREVLSMLAVEDDRSASVSVSHVTGIEEAEEEEEVNVFRVGGMENLEWEVLLNANNLDTITSPDLDHDSEPYFGDHDDYINTAEYEMMFGQFADNDNPLNGRPPASASVVRSLPSVVVTKDDVEGNNALCAVCKDEFCVGENVKALPCSHRYHGDCILPWLGIRNTCPVCRHEFPTDAL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120850g00021 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 254 414 - -
Stsc120850g00021 418 ProSiteProfiles Zinc finger RING-type profile. 369 410 IPR001841 -
Stsc120850g00021 418 SUPERFAMILY RING/U-box 352 415 - -
Stsc120850g00021 418 SMART ring_2 369 409 IPR001841 -
Stsc120850g00021 418 MobiDBLite consensus disorder prediction 38 66 - -
Stsc120850g00021 418 FunFam E3 ubiquitin-protein ligase RING1-like 330 416 - -
Stsc120850g00021 418 Pfam Ring finger domain 369 410 IPR001841 -
Stsc120850g00021 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 416 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120850g00021 Stsc-Chr120850 145235 146491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120850g00021 8 416 C3H Transcription Factor Family AT5G60820 37.002 1.47e-57 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120850g00021 - - pcin:129307991 477.633