Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120850g00020 ATGAAAATTGGTGACATGGAAGGCGATGAAGCCGAGCAAATCCATTCTGGGGTACCTTATGTTACCTTACCACACTATCTGCACTATCCTTCCCCAAACCAGAAACCAATGTTGCCCTCAAGCTTCTTAAACATGGAAATTGGGGAAGGCCATCATGCTTTGAACCATTTGGATCCTTCTCATGGTTTACATCATCTTCCTTTGAGCTACTCCCAACTTCACCTTCCTGGTAATAATAGCAACAATCCGATTCATACCCCGGTTCATAAGTCCTCCCCAAACACATCATCCAACAGCAACAACAATTCTGATGAAGCAAAGGCCATCCTTGATGACAGAAAGAAAAAGAGGATGTTCTCCAACAGGGAATCGGCTCGCAGGTCACGGATGCGAAAGAAGCAACAGATCGAAGTACTTCAGTACCATGTTGACCATCTGCAGACTTTGAACCATCAACTGTCCCAAAAAATCATCTACTTGTTGGAATGTAATCAACAAATCAACCAGCAGAATGCTCAGCTTAAAGAGAAGGTTTCTTCTCTTCAAGTAGCCCTCTCTGACCTGTTAATTCCTGTCGGACATTCTACTGACCAACCTCAACACATACCCGGTGGCTTCCTATCCGAGCCTTCGACTCGAACAATTGCTAGCTCTGGAGCATAA 663 0.4449 MKIGDMEGDEAEQIHSGVPYVTLPHYLHYPSPNQKPMLPSSFLNMEIGEGHHALNHLDPSHGLHHLPLSYSQLHLPGNNSNNPIHTPVHKSSPNTSSNSNNNSDEAKAILDDRKKKRMFSNRESARRSRMRKKQQIEVLQYHVDHLQTLNHQLSQKIIYLLECNQQINQQNAQLKEKVSSLQVALSDLLIPVGHSTDQPQHIPGGFLSEPSTRTIASSGA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120850g00020 220 SMART brlzneu 109 173 IPR004827 GO:0003700|GO:0006355
Stsc120850g00020 220 CDD bZIP_plant_GBF1 114 162 IPR045314 GO:0003700|GO:0006355
Stsc120850g00020 220 MobiDBLite consensus disorder prediction 74 105 - -
Stsc120850g00020 220 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 116 131 IPR004827 GO:0003700|GO:0006355
Stsc120850g00020 220 FunFam BZIP transcription factor 111 162 - -
Stsc120850g00020 220 Coils Coil 164 184 - -
Stsc120850g00020 220 Gene3D - 112 166 - -
Stsc120850g00020 220 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 29 195 IPR044521 -
Stsc120850g00020 220 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 111 174 IPR004827 GO:0003700|GO:0006355
Stsc120850g00020 220 SUPERFAMILY Leucine zipper domain 113 164 IPR046347 GO:0003700|GO:0006355
Stsc120850g00020 220 MobiDBLite consensus disorder prediction 74 131 - -
Stsc120850g00020 220 MobiDBLite consensus disorder prediction 106 131 - -
Stsc120850g00020 220 Pfam Basic region leucine zipper 111 158 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120850g00020 Stsc-Chr120850 142510 143172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120850g00020 111 213 bZIP Transcription Factor Family AT5G60830 52.885 3.81e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc120850g00020 bZIP_2 1.5e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120850g00020 - - ahf:112721804 384.03