Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120849g00032 ATGGGTTTTGGTAATTCAAGATCTGTAAGATTTGAAGAGGATCTCGAGCTACCAAGAACCTCTACAAATAGCAAGAGTGAGAGTAAAAACGGTATTAAGCTCAAATATCACATTGATGGAACACAAATAGCAGAGGCTAGTTCCAACAAAAAGGCAGGGAACAATAAGAAGTTCTTGAAAGGTAGAGTTTTATCAAGAGTGTTCTCAGAGGATTATGAGAGAGTTAAGAGGAGAAGAATCTTAGACCCTCGCGGGCAAGCGATCCACAGATGGAACAAGATCTTCTTGGTGGCGAGCTTGGTGTCTTTGTTTGTGGACCCTTTGTTCTTCTACTTGCCTGTGGTTCAAGATGAAGTGTGCATTGAAATTGGAATAACACTTGAACTTGTCCTCACATTCATAAGAACAGTTGGTGATGCCTTCTATATTCTTCAGATTTTCACCAAGTTTCGCACCGCTTATGTGGCTCCTTCTTCAAGAGTTTTTGGAAGAGGTGAACTTGTTATAGACACTTCCAAGATTGCAGTTAAGTACCTTTTCAAGGGATTTTGGTTGGACTTTCTTGCTGCCCTGCCCCTTCCTCAGGTGCTAATTTGGATTATCATCCCAACTCTTAGGGGTTCAACCATGGCAAACACAAAGAATGTGCTTCGGTTTTTCATCATCTTCCAATATGTTCCCAGGCTATATTTGATTTTCCCACTGTCTTCACAAATTGTAAGTGCTACTGGGGTTGTCACAGAAACAGCATGGGCTGGTGCTGCTTACAATCTCATGCTTTACATGTTGGCAAGCCATATTTTAGGAGCTTGCTGGTACCTTCTATCAATAGAAAGGCAAGAAGCATGTTGGAGGAATGCATGCAATGTTGAGAAGCCATTTTGTGAATATGGATTCTTTGACTGCCACAGGATTGGAAATCCCCAAAGAGACTTATGGTTTCTAGCAAGTAACATCACAAACCTGTGCTCACCAGATTCTAACTTCTATCAGTTTGGTATATATGCTGATGCTGTCACTTCTCAAGTCACATCCTCAGCATTCTTCAATAAGTACTTCTTTTGTCTTTGGTGGGGCCTTAGGAATCTCAGTTCATTGGGACAAGGCCTTCTTACTAGCACTTTTGTTGGGGAAATCATGGTTGCCATTGTTGTTGCAACACTTGGATTGGTTCTTTTTGCATTGCTCATTGGTAATATGCAGACATACCTTCAATCAACTACTGTGAGGTTAGAAGAATGGAGGGTGAAAAGAACAGACACAGAACAATGGATGCATCACAGGCAATTACCACAAGAGCTTAGACAATCTGTTAGAAGATATGATCAATACAAATGGATGGCTACTAGGGGAGTTGATGAAGAAGCTCTCCTAAAAGGTCTTCCATTAGATCTTCGTCGAGACATAAAGCGCCACCTTTGTCTTGACCTTGTTCGAGGAGTACCATTGTTTGATCAAATGGATGAGAGCATGCTAGATGCAATATGTGAGAGACTAAAACCAGCATTATGCACTGAAGGAACATACCTTGTAAGAGAAGGTGATCCAGTGAATGAAATGCTCTTCATAATAAGAGGTCACCTTGATTCTTACACAACCAATGGTGGCAGAGCTGGATTCTTCAACTCATGCCGTATTGGGCCTGGTGATTTCTGTGGAGAGGAGCTTCTAACTTGGGCCTTGGACCCAAGGCCCAGTGTGATTCTACCTTCTTCAACAAGAACAGTTAAGGCCTTCTCAGAAGTTGAGGCATTTGCACTCATTGCTGAAGATCTTAAATTTGTTGCATCACAGTTTAGGAGGCTACATAGCAAGCAACTTAGGCACAAGTTTAGATTCTATTCACACCAATGGAGAACTTGGGCAGCATGTTTCATTCAAGCTGCTTGGAGAAGGCATAAGAAGAGAAAGAATCTTGATAAACTAAGAGCAAAGGAGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATACTAATAATAGTAACAATGATGATGTAACAGTTTGTGAGCCTGAGACTCCAACATCAAGGAGTGTGATGAGGAGTGGTAGGAAGAGTGTTAGCAGGACAGATTCTGGTGTAGTTAGCTCTGTGCAGAAGCCAGCTGAGCCTGATTTTTCGGTTGAAGAATGA 2148 0.4083 MGFGNSRSVRFEEDLELPRTSTNSKSESKNGIKLKYHIDGTQIAEASSNKKAGNNKKFLKGRVLSRVFSEDYERVKRRRILDPRGQAIHRWNKIFLVASLVSLFVDPLFFYLPVVQDEVCIEIGITLELVLTFIRTVGDAFYILQIFTKFRTAYVAPSSRVFGRGELVIDTSKIAVKYLFKGFWLDFLAALPLPQVLIWIIIPTLRGSTMANTKNVLRFFIIFQYVPRLYLIFPLSSQIVSATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRNACNVEKPFCEYGFFDCHRIGNPQRDLWFLASNITNLCSPDSNFYQFGIYADAVTSQVTSSAFFNKYFFCLWWGLRNLSSLGQGLLTSTFVGEIMVAIVVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPQELRQSVRRYDQYKWMATRGVDEEALLKGLPLDLRRDIKRHLCLDLVRGVPLFDQMDESMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAFSEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKNLDKLRAKENNNNNNNNNNNNNNNNTNNSNNDDVTVCEPETPTSRSVMRSGRKSVSRTDSGVVSSVQKPAEPDFSVEE 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120849g00032 715 Gene3D Jelly Rolls 481 601 IPR014710 -
Stsc120849g00032 715 Gene3D Helix hairpin bin 410 474 - -
Stsc120849g00032 715 SMART cnmp_10 483 614 IPR000595 -
Stsc120849g00032 715 SUPERFAMILY cAMP-binding domain-like 413 609 IPR018490 -
Stsc120849g00032 715 CDD CAP_ED 483 614 IPR000595 -
Stsc120849g00032 715 Pfam Ion transport protein 91 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc120849g00032 715 PRINTS EAG/ELK/ERG potassium channel family signature 146 155 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc120849g00032 715 PRINTS EAG/ELK/ERG potassium channel family signature 352 369 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc120849g00032 715 PRINTS EAG/ELK/ERG potassium channel family signature 396 405 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc120849g00032 715 PRINTS EAG/ELK/ERG potassium channel family signature 446 453 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc120849g00032 715 PRINTS EAG/ELK/ERG potassium channel family signature 263 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc120849g00032 715 MobiDBLite consensus disorder prediction 645 702 - -
Stsc120849g00032 715 ProSiteProfiles cAMP/cGMP binding motif profile. 483 568 IPR000595 -
Stsc120849g00032 715 Gene3D - 95 407 - -
Stsc120849g00032 715 ProSiteProfiles IQ motif profile. 619 648 IPR000048 GO:0005515
Stsc120849g00032 715 Coils Coil 642 662 - -
Stsc120849g00032 715 SUPERFAMILY Voltage-gated potassium channels 83 405 - -
Stsc120849g00032 715 MobiDBLite consensus disorder prediction 645 715 - -
Stsc120849g00032 715 FunFam Cyclic nucleotide-gated ion channel 1 410 474 - -
Stsc120849g00032 715 FunFam Cyclic nucleotide-gated ion channel 1 481 599 - -
Stsc120849g00032 715 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 68 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120849g00032 Stsc-Chr120849 238909 242182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120849g00032 54 714 Ion Channels AT2G28260 75.038 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120849g00032 K05391 - gmx:100811847 1132.86