Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120849g00026 ATGTCTGAGGATGGTGTTAATATGAAGGACTCTTGGTTTTTTGAGAAGAATTTTAATGGCCTGTCCGACGAGGCTTTTGATGATGTCTTCAAGTTTTTAGATTTTCCTTTGGAAGATGTGGAACCTAATGTTGTTGAAGAAGACTGGGATGCTCAGTTTAAACGCATTGAGCCATGTTTTGATGTTTTTTCGTTGTCATCGACGGTGCTCTGTAGTGATAAAAGCCAAAAGGAAAAGTCACAACTTGGGGGGAGTTTCTCTGGTTCTCTGGAAGAGACTGCTGGATTGGATCATGGAAAAACCATTCTGAACCAGAATTCATCTCTCAATGGAAAAGATTCGCATCAACTCCGAACCTACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGTTCTTCTTCAGCTGAGAATTCCAACTTAGATCTACCTGCCATCCCGGTAAAGCGTGCTCGAAGCAAGCGCCAACGTGCATCGAGCTTCTGTCCTTTAATCATGATTCCTTCCATTCCTACTTCGCCGGCCTCGCAAATTTATAAAATCAAAGTTGAACCGGCATCAGATTTAGGAACACAATATGCCGGGAAATCATTCAACATTACCAATAAACAGAGGAAAAAGGATCTCCCCGTGTTTTCAGGTCACAACGACATGAAAAGATGTTCACCACAGGAGCCAGTTCCCACCAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCGCAGTGGAGAGAGGGACCAATGGGTCCAAAGACTCTGTGCAATGCCTGCGGTGTTCGATACAGGTCTGGCCGCCTCTTCCCGGAATACCGGCCAGCAGCTAGCCCCACTTTTGTACCAACAGTGCACTCAAACTGTCATAAGAAGGTGATAGAGATGAGAAGCAAAGGCATCCAGCCAAGTGTTAGGAACCCTTTGTCGGCGGCGTCGAACCTTCATGGAAAGTCTGTAGGATAA 951 0.4532 MSEDGVNMKDSWFFEKNFNGLSDEAFDDVFKFLDFPLEDVEPNVVEEDWDAQFKRIEPCFDVFSLSSTVLCSDKSQKEKSQLGGSFSGSLEETAGLDHGKTILNQNSSLNGKDSHQLRTYSPVSVFESSSSSSAENSNLDLPAIPVKRARSKRQRASSFCPLIMIPSIPTSPASQIYKIKVEPASDLGTQYAGKSFNITNKQRKKDLPVFSGHNDMKRCSPQEPVPTRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPTVHSNCHKKVIEMRSKGIQPSVRNPLSAASNLHGKSVG 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120849g00026 316 ProSiteProfiles GATA-type zinc finger domain profile. 224 260 IPR000679 GO:0006355|GO:0043565
Stsc120849g00026 316 PANTHER GATA TRANSCRIPTION FACTOR 46 305 - -
Stsc120849g00026 316 MobiDBLite consensus disorder prediction 298 316 - -
Stsc120849g00026 316 SMART GATA_3 224 274 IPR000679 GO:0006355|GO:0043565
Stsc120849g00026 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 287 - -
Stsc120849g00026 316 CDD ZnF_GATA 229 276 IPR000679 GO:0006355|GO:0043565
Stsc120849g00026 316 Gene3D - 223 303 IPR013088 GO:0006355|GO:0008270
Stsc120849g00026 316 ProSitePatterns GATA-type zinc finger domain. 230 255 IPR000679 GO:0006355|GO:0043565
Stsc120849g00026 316 Pfam GATA zinc finger 230 263 IPR000679 GO:0006355|GO:0043565
Stsc120849g00026 316 MobiDBLite consensus disorder prediction 294 316 - -
Stsc120849g00026 316 FunFam GATA transcription factor 220 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120849g00026 Stsc-Chr120849 191151 195043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120849g00026 15 294 C2C2-Gata Transcription Factor Family AT1G08010 41.259 3.65e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc120849g00026 GATA 3.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120849g00026 - - gmx:100813303 366.696