LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120849g00025	ATGGTGAAATTCCTTGCTGACCCTGAAACCGATGAAGTCTTTGCAAGGATTAGGTTGGTTCCCCTGAGGAATTCAGAGCTTGATTGTGATGATGGAGGTGTCCTTGATGCCAATGCTTCAGAGAATTCAGAAAAGCCTGCATCTTTTGCAAAGACCTTAACTCAATCCGATGCAAACAATGGTGGGGGGTTCTCTGTTCCAAGGTACTGTGCAGAAACCATCTTCCCCCGGCTCGATTACTCTGCGGAGCCGCCGGTTCAGACTGTGATCGCCAAGGATGTTCATGGTGAGGTTTGGAAGTTCAGGCACATATATAGGGGCACACCAAGGAGGCACTTGCTCACAACAGGGTGGAGCAGTTTTGTCAACCAGAAGAAACTGGTTGCAGGGGATTCAATTGTGTTCCTGAGGGCTGAAAATGGTGATCTCTGTGTTGGGATCAGGCGTGCCAAGAGGGGAACCGGTGGGGGATCGGAGGCGCCATCGGGATGGAGCTCGGGGAATGGAAGTTGTGGCCTTGGCTCTTATGGAGCATTTTCTGCCTTCTTGAGAGAGGAGACCAAGCTGTTAAGGAATGGTTGTGGGAATTCAAGTCCTGTTGGTGGTGGTGGTTTGAATGGAAAATCCAAAGTGAGTCCTGAATCTGTGAAGGAGGCTATATCACTGGCTGCTAGCAATCAGCCATTTGAAGTTGTTTACTATCCGAGGGCAAGCACACCGGAGTTTTGCATCAAGGCTTCGGCTGTGAGGGCGGCGATGAGGATTCAATGGAGCACTGGCATGAGGTTCAAGATGGCCTTTGAGACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGGACCATTGCTTCTGTTCAGGTTGTTGATCCTATCCGCTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTTACTTGGGATGAGCCAGATTTGTTACATAATGTGAAGCGCGTAAGCCCATGGTTGGTTGAATTGGTATCAAGCATGCCAGCCATCAATCTATCGCCCTTTTCTCCGCCGAGGAAGAAACTCCGGTTTCCACAACACCCTGACTTCCCCCTCGACCTTCAATTTCCGATACCGTCGTTTTCAGGCAACCCCCTAGGGCCTCATAGCAGCCCCTTGTGTTGTCCATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTTTCAGATCTCTACCTTAACAGCAAACTTCAATTGGGGGTGATTCCGGCAGCGAATGTCCAGCGACTAGATTTGCATTCGGGTTTTCCCAATGGCGGCAACTTCACCAGCCATGACAAGAGCAAAGAAAGCCTGTCATGCTTGCTAACCATGGGAAATTCTCACAATAAGAGTTTGGAGAAATCTGATAATGTTAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCCAGAAGGCCTTCTTCTGGTGGTGGTGACGTTGATGTGTTGCCTCAGAATGGTACCAAGAAAAGTTCAATAGATGAGAATGAGAACAAAGACAAAGACAAAGAGAAGTGGTTTTTCAATGACTCTCAATCTCCTCTTTCACAACAATTTTCACCGGGAAAATCAAAATCATCTTGTAGCACAGAGTTATCTTGGCAAATTGGGCTGGATACTGGTCATTGCAAGGTGTTCATGGAGTCAGAAGATGTTGGAAGGACACTTGACCTGTCACGTCTTGGCTCCTATGATGAACTGTACAGGAGACTCAGCAACATGTTTGGAATCGAAAGATCTGAGTTGTTGAGCCATGTACTCTACCGTGATGCAACTGGTGCTGTCAAGAAAACTGGTGAAGAACCCTTTAGTGACTTCATGAAGACAGCAAAAAGATTGACAATTCTGACGGATCCAAGCAGCAAGGATACAAGAAGGGCCTGGATTACAGGTACAAGGAATGGTGAACATGGATTGGATGCATCAAACAAGACAGGTCCTCTTAGCATATTTGCTTAA	1989	0.4726	MVKFLADPETDEVFARIRLVPLRNSELDCDDGGVLDANASENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGTGGGSEAPSGWSSGNGSCGLGSYGAFSAFLREETKLLRNGCGNSSPVGGGGLNGKSKVSPESVKEAISLAASNQPFEVVYYPRASTPEFCIKASAVRAAMRIQWSTGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSSMPAINLSPFSPPRKKLRFPQHPDFPLDLQFPIPSFSGNPLGPHSSPLCCPSDNAPAGIQGARHAQIGISLSDLYLNSKLQLGVIPAANVQRLDLHSGFPNGGNFTSHDKSKESLSCLLTMGNSHNKSLEKSDNVKRHQFLLFGQPILTEQQISRRPSSGGGDVDVLPQNGTKKSSIDENENKDKDKEKWFFNDSQSPLSQQFSPGKSKSSCSTELSWQIGLDTGHCKVFMESEDVGRTLDLSRLGSYDELYRRLSNMFGIERSELLSHVLYRDATGAVKKTGEEPFSDFMKTAKRLTILTDPSSKDTRRAWITGTRNGEHGLDASNKTGPLSIFA	662

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120849g00025	662	MobiDBLite	consensus disorder prediction	479	510	-	-
	Stsc120849g00025	662	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	2	628	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Stsc120849g00025	662	CDD	B3_DNA	48	149	IPR003340	GO:0003677
	Stsc120849g00025	662	Gene3D	-	549	633	-	-
	Stsc120849g00025	662	FunFam	Auxin response factor	47	151	-	-
	Stsc120849g00025	662	ProSiteProfiles	B3 DNA-binding domain profile.	49	151	IPR003340	GO:0003677
	Stsc120849g00025	662	Gene3D	-	47	151	IPR015300	-
	Stsc120849g00025	662	SMART	B3_2	49	151	IPR003340	GO:0003677
	Stsc120849g00025	662	SUPERFAMILY	DNA-binding pseudobarrel domain	43	155	IPR015300	-
	Stsc120849g00025	662	Pfam	Auxin response factor	219	302	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
	Stsc120849g00025	662	Pfam	B3 DNA binding domain	49	150	IPR003340	GO:0003677
	Stsc120849g00025	662	ProSiteProfiles	PB1 domain profile.	550	630	IPR000270	GO:0005515
	Stsc120849g00025	662	Gene3D	-	256	330	-	-
	Stsc120849g00025	662	FunFam	Auxin response factor	257	330	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120849g00025	Stsc-Chr120849	177027	182368	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120849g00025	2	632	B3 DNA Binding Superfamily	AT4G30080	57.232	0.0	674

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Stsc120849g00025		B3	4.1e-22	CL0405