Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120849g00016 ATGACGAAGGATGTTGAGGTTTCAGAGCAAGGGCAAGGAGGAGAGTACAGTGCAAAAGACTATCATGACCCTCCACCGGCTCCTTTGATAGACTTTGAGGAGCTGACAAAGTGGTCTTTGTACAGAGCAGTGATTGCTGAGTTCATAGCAACGCTTCTTTTCCTTTACATAACGGTTTTGACCATCATTGGTTACAAGCACCAGACAGATCCAAACATTTCTGGTACCTCACAGTGTGATGGTGTTGGAATCTTGGGTATCGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCTGGAATTTCTGGTGGACATATCAACCCGGCCGTTACATTCGGGCTGTTCGTGGGACAGAAGGTGTCCTTAATAAGGGCACTTCTCTACATAATTGCCCAATGTGCCGGCGCCATCTGCGGTGCCGGCCTTGCCAAGGGCTTCCAGAAATCCTACTACGACAGATACGGTGGTGGTGCCAACACTGTGAGCTCCGGCTACAGCAAAGGCACTGCTTTAGGTGCTGAGATCATCGGCACCTTCGTGCTTGTGTACACCGTGTTCTCTGCCACCGATCCCAAGAGGAACGCGAGGGACTCCCATGTTCCAGTGTTGGCACCACTTCCCATTGGGTTCGCTGTGTTCATGGTTCATTTGGCCACTATCCCAGTCACTGGCACCGGTATTAACCCTGCAAGAAGTTTTGGACCTGCTGTTATCTTCAACAATGATAAAGCCTGGGATGACCACTGGATTTACTGGGTTGGACCATTCGTTGGAGCATTAGCAGCTGCAATCTACCACCAACACATTCTGAGAGCAGCAGCCATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAA 870 0.5011 MTKDVEVSEQGQGGEYSAKDYHDPPPAPLIDFEELTKWSLYRAVIAEFIATLLFLYITVLTIIGYKHQTDPNISGTSQCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFVGQKVSLIRALLYIIAQCAGAICGAGLAKGFQKSYYDRYGGGANTVSSGYSKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDHWIYWVGPFVGALAAAIYHQHILRAAAIKALGSFRSNA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120849g00016 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 278 IPR034294 -
Stsc120849g00016 289 NCBIfam MIP family channel protein 46 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120849g00016 289 MobiDBLite consensus disorder prediction 1 22 - -
Stsc120849g00016 289 Gene3D Glycerol uptake facilitator protein. 27 289 IPR023271 -
Stsc120849g00016 289 FunFam Probable aquaporin PIP1-2 27 289 - -
Stsc120849g00016 289 CDD MIP 42 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120849g00016 289 SUPERFAMILY Aquaporin-like 33 275 IPR023271 -
Stsc120849g00016 289 ProSitePatterns MIP family signature. 109 117 IPR022357 -
Stsc120849g00016 289 Pfam Major intrinsic protein 34 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120849g00016 289 PRINTS Major intrinsic protein family signature 177 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120849g00016 289 PRINTS Major intrinsic protein family signature 213 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120849g00016 289 PRINTS Major intrinsic protein family signature 91 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120849g00016 289 PRINTS Major intrinsic protein family signature 128 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120849g00016 289 PRINTS Major intrinsic protein family signature 253 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc120849g00016 289 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120849g00016 Stsc-Chr120849 88115 90163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120849g00016 1 287 Major Intrinsic Protein MIP AT5G60660 77.003 4.21e-164 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120849g00016 K09872 - gmx:732581 521.161