Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120849g00014 ATGGAATTTGTCTTTGAAGATTGTGATCAAATTTCCAATTTGCAAGCTATGAATTATTGGACAAACCATTTAATTTCAGAATCAAACACTGAATGTTTTCATGCAGCTGAGGCTTTGTTCACTTTGAAAGGTTCACTTGGCAGATCACAACAATTGGGATGCAGCAGCATTGTGAAGTATCCGTGTCGAATGCAATGGCCGTGTCGCCTTAACTGCTATAAACTAAAAGATCCAGGTGGAATAGCAGCAAAGGTGGATGGAAACAATGACATTCCAACACTTACACCTGTTCAAGATGCTCAAGTTATTAACAAGCAGGGTGGAAGAAGGGCCGCCGCCGCCACAGTTGGCGGGGCTGCTGCCGCCTTAATTGTCATTGCAATTGTGGTAGTTATCTATATCTGCTTGATGCGTCTTAAGAGAATCATGAGGCAAACATCTGAGAGTGCTTCTTCTATGCCATCTCCCACAGTTGAGATGGGAAGAAGCAACGAGTCAGCGCAAGTAAACGAATTGAGTCCACATTATGCACACAATGCAAGACAGTTAACAATTTCAGAACTAGAACAAGCTACAAGAAGTTTCAATCAAAGTAATATTGTAGGTGAAGATAGATTTGGTTTGGTTTACCAGGGCTTGCTTCAAGATGGATCTATTGTGGCTATAAAGAGGCGAATATTTTCTCTGATGCAGGATTTCACCTTCCAGGTGAGGCAGATATCATGCATTCACCATATCCATCTTGTGAAGCTTATAGGTTACTATGAAGATAGCTATCAACAAATACTAGTGTATGAACATCTCCCTAATGGCCATGTAGGGAATCACCTATATGATAGTGAAGGTTTGCCTATTGGAAAGTTAGACTTGTGGAGAAGGTTATCCATTGCTTTAGGTGCATCTAAAGGACTGGAACATCTTCACAGTCTGGATCCTCCTTTGGTTCACACCAATTTCAGAACTCGAAATGTTCTTTTAGATGAGAGTTACACTGCCAAGGTTTCGGGTTATGGATTCGGCACATTGCAAAGACAGGCTGCAGCCTCATCTTCATGCATAGATTGCTTTCTTGATCCAGAGTTGAGTTCATCAGAAAACTATACAGAGGAGAGTGATGTATACAGCTTTGGAGTCTTTTTACTAGAGTTGATTAGTGGCTGTGAAGTTTATAACAAAAACATGTCAATGGCAGAAGAAAACCTAGCATTCCAGGCAAAGGCAAAGGCAAAGGACAGTGAGGGGTTGGAGAAGTTCATTGATATAACATTAGGAGAGCATGAAAAGCATGGTGGTTGGAGGATGATGAGGTTGGCATTGTTATGCATAGGCATGAGTTATACAAGGCCATCAATGGGGCAAATAGTGCAAGAGCTAGAGCGGATTCAAAGAGAGATTGCTCCTTTGTATTCACATGTCAATGAGGACATTGCTGTGGTTACTCTAGGGAGTGAACTTTTTCAATAA 1464 0.4133 MEFVFEDCDQISNLQAMNYWTNHLISESNTECFHAAEALFTLKGSLGRSQQLGCSSIVKYPCRMQWPCRLNCYKLKDPGGIAAKVDGNNDIPTLTPVQDAQVINKQGGRRAAAATVGGAAAALIVIAIVVVIYICLMRLKRIMRQTSESASSMPSPTVEMGRSNESAQVNELSPHYAHNARQLTISELEQATRSFNQSNIVGEDRFGLVYQGLLQDGSIVAIKRRIFSLMQDFTFQVRQISCIHHIHLVKLIGYYEDSYQQILVYEHLPNGHVGNHLYDSEGLPIGKLDLWRRLSIALGASKGLEHLHSLDPPLVHTNFRTRNVLLDESYTAKVSGYGFGTLQRQAAASSSCIDCFLDPELSSSENYTEESDVYSFGVFLLELISGCEVYNKNMSMAEENLAFQAKAKAKDSEGLEKFIDITLGEHEKHGGWRMMRLALLCIGMSYTRPSMGQIVQELERIQREIAPLYSHVNEDIAVVTLGSELFQ 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120849g00014 487 SUPERFAMILY Protein kinase-like (PK-like) 174 468 IPR011009 -
Stsc120849g00014 487 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 122 461 IPR047117 -
Stsc120849g00014 487 Pfam Protein tyrosine and serine/threonine kinase 198 398 IPR001245 GO:0004672|GO:0006468
Stsc120849g00014 487 Gene3D Phosphorylase Kinase; domain 1 156 267 - -
Stsc120849g00014 487 ProSiteProfiles Protein kinase domain profile. 195 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120849g00014 487 Gene3D Transferase(Phosphotransferase) domain 1 268 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120849g00014 Stsc-Chr120849 69976 72205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120849g00014 120 465 Receptor kinase-like Gene Family AT4G02010 33.978 3.87e-51 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Stsc120849g00014 PK_Tyr_Ser-Thr 6.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120849g00014 - - gmx:100815066 617.461