Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120849g00007 ATGATCAGTTTCTGTAATTGCTTTGGGATAATCAAGAAAGAAAAAAATGAAAGGCCTACGCATGGGGTAAAAAACTTTTTCTCCCGGGGGTTGTTGCCTAGATTAAGAGAAGAGGAAAATGTCTCATATAGTGGTGAGTTTACTAGTAACACCACCAGTGGAGATGAAACTGACAGCCAGCCTCGAGCCAACCGATCGGAGGAGATTTTGAACTTGAGAGCAGAGAATGACATGGTTTGTAGGCGGGTTCCTGTTAAGGTGACCGACAAACTTGTTCGTGCGGAGGATGAAGATGGGAACAAGATGATCAATGAGTATGTTCGAGAGTACAGGATTGGTTCAGGTAGCTATGGCAAAGTGGTTCTATATCGAAGTGTTGTAGATGGAAAGCACTATGCAATTAAGTCCTTTCATAAGTCCCATTTGCTAAAGCTTCGAGTTGCTGGCTCTGAGACCGCCATGTCTGATGTTCTGCGTGAGGTACTTATTATGAAAATGGTGGAACACCCTAATATAGTCAACCTCATTGAGGTGATTGATGATCCAGAATCAGATTGCTTCTACATGGTGCTGGAATATGTGGAGGGCAAATGGATCTGTGAGGGTTCAGGTCGTGGTTGTGCCTTGGGGGAAGACACTGTTAGGAAATACTTGCGTGATATAGTATCAGGATTAAGATATCTTCATGATCATAATATAATACATTTGGACATCAAACCTGATAATTTGTTGATTACTCGTGAGGGTAAAGTCAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGATAATGATATACTTTATCGATCACCTGGCACCCCGGTTTTCTCTGCACCAGAATGTTGTGTAGGAGGTAGGTATCATGGTAAAGCTTCAGACACATGGGCAGTAGGAGTTACTTTGTACTGTATGATAATGGGTGAATACCCATTTCTCGGAAAAGCGCTTCCAGATACATATGAAAAAATACTCAATAATCCACTAGTACTCCCGGATGACATTAACCCACAGTTAAAGAACTTGATTGAAGGACTTCTTTGCAAAGATCCAAAAGCAAGGATGACATTGAATGAAGTTGCAGAGCATAGGTGGGTTATTGGAGATGATGGACCAATTAGTGAATACTTGTGTTGGTGCAAACAGAAGAAGGGAGTTGTGGTGGAACAACAACATTAG 1182 0.4188 MISFCNCFGIIKKEKNERPTHGVKNFFSRGLLPRLREEENVSYSGEFTSNTTSGDETDSQPRANRSEEILNLRAENDMVCRRVPVKVTDKLVRAEDEDGNKMINEYVREYRIGSGSYGKVVLYRSVVDGKHYAIKSFHKSHLLKLRVAGSETAMSDVLREVLIMKMVEHPNIVNLIEVIDDPESDCFYMVLEYVEGKWICEGSGRGCALGEDTVRKYLRDIVSGLRYLHDHNIIHLDIKPDNLLITREGKVKIGDFSVSQAFEDDNDILYRSPGTPVFSAPECCVGGRYHGKASDTWAVGVTLYCMIMGEYPFLGKALPDTYEKILNNPLVLPDDINPQLKNLIEGLLCKDPKARMTLNEVAEHRWVIGDDGPISEYLCWCKQKKGVVVEQQH 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120849g00007 393 ProSiteProfiles Protein kinase domain profile. 106 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120849g00007 393 MobiDBLite consensus disorder prediction 42 59 - -
Stsc120849g00007 393 CDD STKc_LKB1_CaMKK 112 367 - -
Stsc120849g00007 393 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Stsc120849g00007 393 FunFam Serine/threonine-protein kinase GRIK2 96 393 - -
Stsc120849g00007 393 SUPERFAMILY Protein kinase-like (PK-like) 102 378 IPR011009 -
Stsc120849g00007 393 Gene3D Transferase(Phosphotransferase) domain 1 96 390 - -
Stsc120849g00007 393 MobiDBLite consensus disorder prediction 42 63 - -
Stsc120849g00007 393 FunFam Serine/threonine-protein kinase Ssp1 100 202 - -
Stsc120849g00007 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Stsc120849g00007 393 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 56 369 - -
Stsc120849g00007 393 SMART serkin_6 106 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120849g00007 393 Pfam Protein kinase domain 106 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120849g00007 Stsc-Chr120849 20924 25195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120849g00007 112 374 CBL-interacting serine-threonine protein kinases AT5G35410 34.221 3.44e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Stsc120849g00007 Pkinase 9.6e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120849g00007 K00908 - gmx:100776013 598.586