Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120849g00006 ATGCTTTGGCCATTTGAGGTGAATCAGATTGGTGCTGTATTTGGATTGGGGAGTGCTGTAGTTTGCAATATGATCAGTTTCTGTAATTGCTTTGGGATAATCAAGAAAGAAAAAAATGAAAGGCCTACGCATGGGGTAAAAAACTTTTTCTCCCGGGGGTTGTTGCCTAGATTAAGAGAAGAGGAAAATGTCTCATATAGTGGTGAGTTTACTAGTAACACCACCAGTGGAGATGAAACTGACAGCCAGCCTCGAGCCAACCGATCGGAGGAGATTTTGAACTTGAGAGCAGAGAATGACATGGTTTGTAGGCGGGTTCCTGTTAAGGTGACCGACAAACTTGTTCGTGCGGAGGATGAAGATGGGAACAAGATGATCAATGAGTATGTTCGAGAGTACAGGATTGGTTCAGGTAGCTATGGCAAAGTGGTTCTATATCGAAGTGTTGTAGATGGAAAGCACTATGCAATTAAGTCCTTTCATAAGTCCCATTTGCTAAAGCTTCGAGTTGCTGGCTCTGAGACCGCCATGTCTGATGTTCTGCGTGAGGTACTTATTATGAAAATGGTGGAACACCCTAATATAGTCAACCTCATTGAGGTGATTGATGATCCAGAATCAGATTGCTTCTACATGGTGCTGGAATATGTGGAGGGCAAATGGATCTGTGAGGGTTCAGGTCGTGGTTGTGCCTTGGGGGAAGACACTGTTAGGAAATACTTGCGTGATATAGTATCAGGATTAAGATATCTTCATGATCATAATATAATACATTTGGACATCAAACCTGATAATTTGTTGATTACTCGTGAGGGTAAAGTCAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGATAATGATATACTTTATCGATCACCTGGCACCCCGGTTTTCTCTGCACCAGAATGTTGTGTAGGAGGTAGGTATCATGGTAAAGCTTCAGACACATGGGCAGTAGGAGTTACTTTGTACTGTATGATAATGGGTGAATACCCATTTCTCGGAAAAGCGCTTCCAGATACATATGAAAAAATACTCAATAATCCACTAGTACTCCCGGATGACATTAACCCACAGTTAAAGAACTTGATTGAAGGACTTCTTTGCAAAGATCCAAAAGCAAGGATGACATTGAATGAAGTTGCAGAGCATAGGTGGGTTATTGGAGATGATGGACCAATTAGTGAATACTTGTGTTGGTGCAAACAGAAGAAGGGAGTTGTGGTGGAACAACAACATTAG 1251 0.4197 MLWPFEVNQIGAVFGLGSAVVCNMISFCNCFGIIKKEKNERPTHGVKNFFSRGLLPRLREEENVSYSGEFTSNTTSGDETDSQPRANRSEEILNLRAENDMVCRRVPVKVTDKLVRAEDEDGNKMINEYVREYRIGSGSYGKVVLYRSVVDGKHYAIKSFHKSHLLKLRVAGSETAMSDVLREVLIMKMVEHPNIVNLIEVIDDPESDCFYMVLEYVEGKWICEGSGRGCALGEDTVRKYLRDIVSGLRYLHDHNIIHLDIKPDNLLITREGKVKIGDFSVSQAFEDDNDILYRSPGTPVFSAPECCVGGRYHGKASDTWAVGVTLYCMIMGEYPFLGKALPDTYEKILNNPLVLPDDINPQLKNLIEGLLCKDPKARMTLNEVAEHRWVIGDDGPISEYLCWCKQKKGVVVEQQH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120849g00006 416 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Stsc120849g00006 416 MobiDBLite consensus disorder prediction 66 82 - -
Stsc120849g00006 416 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 79 392 - -
Stsc120849g00006 416 SMART serkin_6 129 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120849g00006 416 FunFam Serine/threonine-protein kinase GRIK2 119 416 - -
Stsc120849g00006 416 ProSiteProfiles Protein kinase domain profile. 129 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120849g00006 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Stsc120849g00006 416 MobiDBLite consensus disorder prediction 66 86 - -
Stsc120849g00006 416 Gene3D Transferase(Phosphotransferase) domain 1 119 413 - -
Stsc120849g00006 416 FunFam Serine/threonine-protein kinase Ssp1 123 225 - -
Stsc120849g00006 416 Pfam Protein kinase domain 129 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120849g00006 416 SUPERFAMILY Protein kinase-like (PK-like) 125 401 IPR011009 -
Stsc120849g00006 416 CDD STKc_LKB1_CaMKK 135 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120849g00006 Stsc-Chr120849 20924 25195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120849g00006 135 389 CBL-interacting serine-threonine protein kinases AT5G35410 34.510 6.78e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Stsc120849g00006 Pkinase 1.1e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120849g00006 K00908 - gmx:100776013 598.586