Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120849g00001 ATGATGATGATGTCTTGGTCAGAAGCCTTTTCATCATCAGTAGCACCTCCTTCCAGCAGCACCTTGGTTCATCAACAGGTAGTTCATGAGCCAAACCCTAATAATAATCCCAACCCTAATTCAAATCCAGTAGTAGTGAAGAGAAAGCGAAGTCAACCCGGAAGACCAGATCCAGAGGCAGAAGTAATAGCTCTATCGCCAAAGTCGCTGATGGCAACGAACCGTTTCGTATGCGAGATATGCAAGAAGGGCTTCCAGAGGGACCAGAACCTGCAGCTGCACCGGCGAGGCCACAACCTCCCCTGGAAGCTGAAGCAGAGGGAGAAGGAGGAGGTGGTTAGGAAGAAGGTGTACGTGTGCCCGGAGAAGACCTGCGTTCACCACGACGCTTCTCGTGCTCTTGGGGACCTGACGGGGATCAAGAAACACTTCAGCAGAAAGCACGGTGAGAAGAGATGGAAGTGCGAGAAATGCTCCAAGAAATACGCAGTTCAGTCGGACTGGAAGGCCCATTCCAAGATCTGTGGCACCAGAGAGTATCGTTGTAACTGTGGCGCTCTCTTCTCCAGGAAGGACAGTTTCCTAACTCATAGATCCTTTTGTCAAGCCTTGGTGGCTCAACCGAATCATCACTACAACAATGGGCTAATTGGTGGTGGTGGTGGTGGTGGTGTGTCCATGGCAGCTGTAGCAGAAGCAATGAATGTGTTCGGGTCACCATCTTCATCACCATGGATGAATAATAATAATAATGTGTTGGTACTGAAGAGAGAGGAAGAAGAGAATTGGAAGAAGGTGGGAGAGTTGTTGTACTCGTCGTCGTCGTCATCAACAGTTCTAGGTCACATGTCTGCTACTGCCTTGTTGCAGAAAGCTACCCAAATGGAATCTATTACCAGCAATGCCGCCTTGGGTTTCATGCTTAGTAGTTCTTCTTCCCAACCCAATAATCCTAATAATAATTATACCAGTATTGGATGCGGTGCAGCCTTCTCCTCCTTCAATAGCGATTCATCAAACTTACTTTTACAGCACCACAATTCAAGTCATGAACAAGACCATCTTGGCTTTGGGTTAACCAGAGACTTTCTTGGCGTTGGCGGATTCACCAAGTTCATCAATAATCCAATCATGGCATCCCATCATTCCCTCCTCACTCCTCCTCATCATCACTTCGCTCCACATCAAGAATGA 1194 0.4774 MMMMSWSEAFSSSVAPPSSSTLVHQQVVHEPNPNNNPNPNSNPVVVKRKRSQPGRPDPEAEVIALSPKSLMATNRFVCEICKKGFQRDQNLQLHRRGHNLPWKLKQREKEEVVRKKVYVCPEKTCVHHDASRALGDLTGIKKHFSRKHGEKRWKCEKCSKKYAVQSDWKAHSKICGTREYRCNCGALFSRKDSFLTHRSFCQALVAQPNHHYNNGLIGGGGGGGVSMAAVAEAMNVFGSPSSSPWMNNNNNVLVLKREEEENWKKVGELLYSSSSSSTVLGHMSATALLQKATQMESITSNAALGFMLSSSSSQPNNPNNNYTSIGCGAAFSSFNSDSSNLLLQHHNSSHEQDHLGFGLTRDFLGVGGFTKFINNPIMASHHSLLTPPHHHFAPHQE 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120849g00001 397 MobiDBLite consensus disorder prediction 11 47 - -
Stsc120849g00001 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Stsc120849g00001 397 MobiDBLite consensus disorder prediction 11 59 - -
Stsc120849g00001 397 SUPERFAMILY beta-beta-alpha zinc fingers 75 173 IPR036236 -
Stsc120849g00001 397 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Stsc120849g00001 397 Gene3D Classic Zinc Finger 72 99 - -
Stsc120849g00001 397 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 376 IPR031140 -
Stsc120849g00001 397 Gene3D Classic Zinc Finger 112 202 - -
Stsc120849g00001 397 SMART c2h2final6 153 173 IPR013087 -
Stsc120849g00001 397 SMART c2h2final6 76 98 IPR013087 -
Stsc120849g00001 397 SMART c2h2final6 118 148 IPR013087 -
Stsc120849g00001 397 FunFam protein indeterminate-domain 12-like 55 124 - -
Stsc120849g00001 397 FunFam protein indeterminate-domain 5, chloroplastic-like 131 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120849g00001 Stsc-Chr120849 439 2178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120849g00001 46 207 IDZ Gene Family AT5G03150 82.716 1.19e-103 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc120849g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120849g00001 K25870 - adu:107461721 368.237