Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120848g00020 ATGGAACTAAGTGGTATAATTGATGTTGACACATTATTTGAGTTGTCAAATTTGACAAGTTTCAGTGTAATTGGAAACAACTTTGAGGGTCCAATGCCTGAATTCAAGAAGATTGTGTGGCTAAAAGCATTGTTTCTTTCAAATAACAGATTCTCTGGTGAGATTGATGATGATGCTTTTGAGGGTATGAGAAGATTGAAGAAGGTGCACTTGGCAGAGAATGAGTTCTTTGGTTATATTCCAAAGTCTATTGCTGAATTGCCTAAGCTTTTGGAATTGGACTTAAGTGGTAACATCTTTCAAGGCCTAATTCCACAGTTTCATCAAAAGAATCTCAACTTCAATGTGTTTGATTTATCAAACAACCAGTTGGAGGGTATGATACCTGAAAGCTTAATCAACCAAGATCCATCCTCATTTGCTGGCAACAAATATCTATGTGGAAAGCCATTGACCAAGAGCTGCAATGCCACTCCTAATGTGACTTTCGAATTCCCTTCACCTCGGCCAAAGCCAAACCGCCACACTCTTATAATTGTTATTACGGTGGCCGTGATCGTGGTGGCTTCAATACTAGCAGTTCTGTTCATCCGCGGCCGACGGCCTATAAAATCGAGCAAGAAATTAATAAAAACAACACTCCATACCAATCAGTCAGCCTACAACACCAGTGGTGCACAATCAATTGTTATTTTGACAAATGATTTAAACAAAGAAGAAAATGGAGAGTTAAATTTTGTTAGGGAAGATAGAAGGAACTCATTTGATTTGCAAGGGTTGCTTAGGGCTTCAGCTGAGGTACTTGGTAGTGGTAGTTTTGGTTCTACCTACAAGGCTATGGTTTTGAATAACAATAGTGGTAAGGAAGAAGCAATGGTTGTGAAGAGGTTTAGACTCATGAACAATGTTGGGAAACATGAGTTCTATGAACACATGAGAAGGCTTGGGAGTTTGTCACACCCTAATTTGCTCCCTCTTGTTGCATTCCATTATAGAAAACAAGACAAGTTTTTGGTTTATGATTTTGGTGAAAATGGAAGCTTGGCTACTCATCTACATGGTAGGAACAATGGATGCATGCTAAGGTGGCCAACACGTTTAAAGATCATAAAAGGAGTAGCAAGGGGACTTGCATATCTCTACACACAGTTCCCAAACCAAAGACTCCCCCATGGCCATCTCAAATCCTCCAACGTAATCCTCGACGTGGAATTCGAGCCGCGTCTAACGGAATACGGACTCATACCCGTCATGAACAAGAGTCACGCTCTCAAGTTCATGGCGGCTTACAAGTCCCCCGAGTCATCCCACCGGACAAACGCCGCGACCGAGAAAACGGACGTGTGGTGTCTGGGAATCTTGATTCTAGAAGTGCTGACCGGGAGGTTCCCAGCAAACTATCTGAGCCATGGAGGTGAGAACAATGCTGACCTGGCAAGTTGGGTGAACACGGTGGTGAGGGAAGAGTGGAGTGGTGAAGTGTTTGATGAGGGCATAATGGGAATAAGAAATAATAATAATGGGAGTGAGGGTGAGATGTTGAAGCTTTTGAGGATTGGGATGTGTTGTTGTGAGTGGGATTTGGAGAGTAGGTGGGATTGGAGAGAAGCATTGGAAAAGATTGAGGAGGTGAAGGAGAATAATAATGAAATAACAAGAGATTATGATGATAATAATTCTAATAATTCTTATTCTTATGTTAGTGATGGAGATTTGTATTCTAAGGCTACTTCTTTCACTAATGATGACTTCTCTTTCCCACTTACGGGTAATAGTTGA 1779 0.4137 MELSGIIDVDTLFELSNLTSFSVIGNNFEGPMPEFKKIVWLKALFLSNNRFSGEIDDDAFEGMRRLKKVHLAENEFFGYIPKSIAELPKLLELDLSGNIFQGLIPQFHQKNLNFNVFDLSNNQLEGMIPESLINQDPSSFAGNKYLCGKPLTKSCNATPNVTFEFPSPRPKPNRHTLIIVITVAVIVVASILAVLFIRGRRPIKSSKKLIKTTLHTNQSAYNTSGAQSIVILTNDLNKEENGELNFVREDRRNSFDLQGLLRASAEVLGSGSFGSTYKAMVLNNNSGKEEAMVVKRFRLMNNVGKHEFYEHMRRLGSLSHPNLLPLVAFHYRKQDKFLVYDFGENGSLATHLHGRNNGCMLRWPTRLKIIKGVARGLAYLYTQFPNQRLPHGHLKSSNVILDVEFEPRLTEYGLIPVMNKSHALKFMAAYKSPESSHRTNAATEKTDVWCLGILILEVLTGRFPANYLSHGGENNADLASWVNTVVREEWSGEVFDEGIMGIRNNNNGSEGEMLKLLRIGMCCCEWDLESRWDWREALEKIEEVKENNNEITRDYDDNNSNNSYSYVSDGDLYSKATSFTNDDFSFPLTGNS 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120848g00020 592 Pfam Leucine rich repeat 41 98 IPR001611 GO:0005515
Stsc120848g00020 592 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 550 IPR046959 -
Stsc120848g00020 592 ProSitePatterns Protein kinases ATP-binding region signature. 268 295 IPR017441 GO:0005524
Stsc120848g00020 592 ProSiteProfiles Protein kinase domain profile. 262 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120848g00020 592 Gene3D Phosphorylase Kinase; domain 1 230 342 - -
Stsc120848g00020 592 SUPERFAMILY L domain-like 8 134 - -
Stsc120848g00020 592 SUPERFAMILY Protein kinase-like (PK-like) 266 546 IPR011009 -
Stsc120848g00020 592 Gene3D Ribonuclease Inhibitor 2 161 IPR032675 -
Stsc120848g00020 592 Coils Coil 534 561 - -
Stsc120848g00020 592 Gene3D Transferase(Phosphotransferase) domain 1 344 569 - -
Stsc120848g00020 592 Pfam Protein kinase domain 265 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120848g00020 Stsc-Chr120848 248069 252363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120848g00020 1 570 Receptor kinase-like Gene Family AT5G35390 48.403 4.32e-168 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc120848g00020 Pkinase 7.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120848g00020 - - ahf:112754157 715.687