Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120848g00003 ATGGACCCCAAATCTTGCACCGTTATCTCACCACCGTCGTTACTAGCCACCGCTTACTGTGATTTCCGCCGTACCCCGACGCCGGAGCTGGATCTCGATGTCGAAGAACTCATGAAGAGTTGGATGGTCGTCGCGGCACCGAACGAGGAAGAAGAACACGCCGACGACAACGACATGAAACCTTCTATGACGGATCCGTTCATCGGCACCGGCGGCGGTGACGGCGGCGTTCCTTCCGCCTCCGGCATCGCCGCTTTCCGTAACCCGGATGTGGTGGTGACTACATTTTCAACTTGTACTAGCGGAGTGACGGATAATAATAACAATATTATTAACTACAACAATCATCAGCAGCAGCAGCTTCTGTGCTCTCAGAACCTCACTCGAAACCATTCAAACATCTCTGCAACTATTGATTCTCAGTCATCCATTTGTGTTGGAAGTCCAGTGTCAGCAAATAAACCAAAGGGTGGCAGAGGTGGTGGTGGCGGCGGAGGCGAAGGGAAAGGAGGGAGCACGAGTGGTTCGTCATCACGTGAGCCGTCCGATGAAGATGATGAGGCAGGTCCATGTGAGCAAAGCACAAACCCTCTTGATATGAAGCGCCTCAGAAGGAAGGTTTCTAATCGCGAATCTGCAAGGAGGTCCAGAAGAAGGAAGCAAGCTTATTTGGCTGACCTTGAGTCCCAGGTTGAACAGCTGAGGCTGGAAAATGCAACCCTATACAAGCAGCTTACAGATGCTAGCCAACACTTTCGTGATGCTGATACAAATAACCGAGTCTTAAAATCAGATGTTGAAGCTTTGAGAGCTAAGGTGAAGCTAGCTGAGGACATGGTTGCTAGAAGCTCATTCACCAATCTGAACAACCAGCTACTTCATCAGAGGGGTCAGATGAACAGCAACAACAACAATTTGCGGGGCGTGGCGCATGTGTCGCCAACCATCACTGTCCATGGAAATGACTCCTCATATGGAAGCTGCATCACCAGTGTTGATGGACAAAACTCAGCTCATCTTGGATCAGGACTTGCTGGAAACTTGGACATAACTAATAACAATAATAATAATAATTATAGTGACTATAATGCAGTCATAAGCGATGCTGTTAGCTCTGTCACTAACATATGGCCATAG 1137 0.4864 MDPKSCTVISPPSLLATAYCDFRRTPTPELDLDVEELMKSWMVVAAPNEEEEHADDNDMKPSMTDPFIGTGGGDGGVPSASGIAAFRNPDVVVTTFSTCTSGVTDNNNNIINYNNHQQQQLLCSQNLTRNHSNISATIDSQSSICVGSPVSANKPKGGRGGGGGGGEGKGGSTSGSSSREPSDEDDEAGPCEQSTNPLDMKRLRRKVSNRESARRSRRRKQAYLADLESQVEQLRLENATLYKQLTDASQHFRDADTNNRVLKSDVEALRAKVKLAEDMVARSSFTNLNNQLLHQRGQMNSNNNNLRGVAHVSPTITVHGNDSSYGSCITSVDGQNSAHLGSGLAGNLDITNNNNNNNYSDYNAVISDAVSSVTNIWP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120848g00003 378 Coils Coil 217 244 - -
Stsc120848g00003 378 FunFam BZIP transcription factor 199 250 - -
Stsc120848g00003 378 MobiDBLite consensus disorder prediction 149 221 - -
Stsc120848g00003 378 Pfam bZIP transcription factor 200 247 IPR004827 GO:0003700|GO:0006355
Stsc120848g00003 378 SMART brlzneu 197 261 IPR004827 GO:0003700|GO:0006355
Stsc120848g00003 378 Coils Coil 259 279 - -
Stsc120848g00003 378 Gene3D - 200 255 - -
Stsc120848g00003 378 PANTHER BASIC LEUCINE ZIPPER 63 118 357 - -
Stsc120848g00003 378 CDD bZIP_plant_GBF1 202 253 IPR045314 GO:0003700|GO:0006355
Stsc120848g00003 378 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 204 219 IPR004827 GO:0003700|GO:0006355
Stsc120848g00003 378 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 199 262 IPR004827 GO:0003700|GO:0006355
Stsc120848g00003 378 SUPERFAMILY Leucine zipper domain 201 250 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120848g00003 Stsc-Chr120848 26811 34940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120848g00003 139 378 bZIP Transcription Factor Family AT5G24800 50.000 1.37e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc120848g00003 bZIP_1 7e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120848g00003 K25784 - gmx:778193 285.804