Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120847g00019 ATGGGGAAGAAAAGGGGAAGCTGGTTCTCTTCCGTGAAGAAAGTTTTCAAGTCATCTCCTAAGGATTCCAACTCTTCCGTTCAACACAACAAGAAGGAAAATGAAGATAAGTGGCAGCATGAAGCACCAGAGGTTGTGTCTTTTGAGCATTTTCCAGCAGAGAGTTCTCCTGATGCAACCAATGAGGGTAGCACCACATCAACCCCAGTGGCTGAAGACAGAAATCATGCTATTGCCTTTGCTGCTGCGACTGCCGCAGCTGCCGAAGCTGCCGTGGTGGCTGCTCAGGCAGCAGCTAGGGTTGTGAGAATGGCAGGTTATGGACGCCACTCCAAGGAGGAAAGGGCTGCAATACTCATTCAATCATACTACAGAGGATACCTTGCTCGACGTGCACTGCGAGCTTTGAAGGGATTGGTGAGGCTGCAAGCACTTGTGAGGGGACATAATGTGCGGAAGCAAGCGCAGATGACAATGCGGTGCATGCAAGCATTGGTTCGAGTTCAGGCGAGAGTAAGGGCTCGCAGAATCCAGTTAACTCAGGAGAAGCAAGAGGAGAGACAGCAATTGGACCACCATCAACACCAACAAAAACCACCACCTAAGCCTGTTATAAGCCCTGTGACAAAGTTAGACACAGATAACTCTTGGGACAATAGGCGCCAAAGTAGCCAGAAAATTAAGGACAATGACTTAAGGAAACATGAAGCTACAATGAAGAGGGAGAGAGCTCTTGCTTACGCCTTCAATTACCAGCAGCAACAGAAGCATTATTTGCATATGGACCCAAATGGTGAGGAAATTGGAATCTATCCCTATGGTGGAAATGAGAGTGAGAGAGCACATTTGGATTGGAACTGGTTGGAACGTTGGATGTCATCACAACAATCCCAACAACATGTTAGGTCACGTGACAACACATACATGACTCTTGCTACAACGGCCACTACAGCCACCGATGACATGTCCGAAGAGAAAACGGTTGAGATGGACATGGTTGGGCCTTCTGATCCAATTCACTCATATATGGGCCTAATGGGCCATGACTACCTTGACTCAAGCCCAATCTCAAAGTTGCAACGCCAGGGACAGCACAGTGGAGGTGGAGGTGGAAGTGTGCCTAGCTACATGGCCCCAACACAGTCTGCAAAGGCCAAGGTTAGGGGTCAGAGCCAACTTAAGCAACGGGCTTCACCTGGGCCCAATTGGAACTCTTCCACAAGGAGACACTCTTCTGTTGGGTTGGGCTTTGACTCATCTAGCTCTGGTGAGCCAATTGGAACGTACCCGTTTCTAAGGTGCCCAAGCCCAAAGATTAATGGGGTGAGGCTCCAATCTAGACGAATTTCTGGCGGGAGCCCAGATCGTGTAAGTGGTGAAGATTGGGCTCTTCCCCTTGGAGCCCATGCCTGGGCATGA 1419 0.4947 MGKKRGSWFSSVKKVFKSSPKDSNSSVQHNKKENEDKWQHEAPEVVSFEHFPAESSPDATNEGSTTSTPVAEDRNHAIAFAAATAAAAEAAVVAAQAAARVVRMAGYGRHSKEERAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRIQLTQEKQEERQQLDHHQHQQKPPPKPVISPVTKLDTDNSWDNRRQSSQKIKDNDLRKHEATMKRERALAYAFNYQQQQKHYLHMDPNGEEIGIYPYGGNESERAHLDWNWLERWMSSQQSQQHVRSRDNTYMTLATTATTATDDMSEEKTVEMDMVGPSDPIHSYMGLMGHDYLDSSPISKLQRQGQHSGGGGGSVPSYMAPTQSAKAKVRGQSQLKQRASPGPNWNSSTRRHSSVGLGFDSSSSGEPIGTYPFLRCPSPKINGVRLQSRRISGGSPDRVSGEDWALPLGAHAWA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120847g00019 472 MobiDBLite consensus disorder prediction 1 69 - -
Stsc120847g00019 472 Coils Coil 169 196 - -
Stsc120847g00019 472 Gene3D - 114 155 - -
Stsc120847g00019 472 MobiDBLite consensus disorder prediction 182 198 - -
Stsc120847g00019 472 SMART iq_5 112 134 IPR000048 GO:0005515
Stsc120847g00019 472 SMART iq_5 135 156 IPR000048 GO:0005515
Stsc120847g00019 472 MobiDBLite consensus disorder prediction 357 421 - -
Stsc120847g00019 472 PANTHER IQ-DOMAIN 5-RELATED 1 412 - -
Stsc120847g00019 472 Pfam Protein of unknown function (DUF4005) 354 411 IPR025064 -
Stsc120847g00019 472 MobiDBLite consensus disorder prediction 182 234 - -
Stsc120847g00019 472 ProSiteProfiles IQ motif profile. 113 141 IPR000048 GO:0005515
Stsc120847g00019 472 MobiDBLite consensus disorder prediction 26 44 - -
Stsc120847g00019 472 Pfam IQ calmodulin-binding motif 114 134 IPR000048 GO:0005515
Stsc120847g00019 472 Pfam IQ calmodulin-binding motif 140 155 IPR000048 GO:0005515
Stsc120847g00019 472 MobiDBLite consensus disorder prediction 214 234 - -
Stsc120847g00019 472 ProSiteProfiles IQ motif profile. 137 164 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120847g00019 Stsc-Chr120847 178026 182230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120847g00019 1 438 IQD Protein Family AT3G49260 49.892 2.03e-93 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120847g00019 - - aprc:113873497 543.502