Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120847g00008 ATGGAGTTCTTTAATAACGAACTCCAGTCTTTCTCTAACGACATTGACAAATTAATGGAGTTTTCACCTATGGATGATTTCTACGATTGGGCGCCATTGTTAAGCAATCAGCACCTTTTCTCCATCAACGACTTGCCGAAACTGAACAACGACTTCGACGACCTTCCACCACTCGATGAACTCAACCAACTTGACGAGCACTTCAAGAGAGAAATTCAAGAAGAGGAGGAGGATAATCAAGAAAAGAAGCGGTTTTTATTATCAGAACTTGTTCCCAGTAGCAGCATTATTGGAACAAAAAAGAAGAAGAACGAGTTGGAATTTGATGAGATTAAGAAGCACTTCGATTTGCCAATCACAGAAGCTGCTAACAAGATGAACATTGGTGTCACATTGTTGAAGAGAAGGTGTAGAGAACTCAGCATCAACCGTTGGCCTCACAGAAAAATCAAAAGCTTGCATTTACTCATACAAAACCTCAAGGAGATGGGTTTGGATAATGAGGTTGAAATGTTGGAGCAAGAAACAAAGATGATGGAGAAAATTCCGGGGATGGAACTAACAAAAGAGACCAAGAGACTAAGGCAGGCATGTTTTAAAGCCAATTACAAAAAGAGGAGATTTTTGGCCTCCAAATCTTACTAG 645 0.4 MEFFNNELQSFSNDIDKLMEFSPMDDFYDWAPLLSNQHLFSINDLPKLNNDFDDLPPLDELNQLDEHFKREIQEEEEDNQEKKRFLLSELVPSSSIIGTKKKKNELEFDEIKKHFDLPITEAANKMNIGVTLLKRRCRELSINRWPHRKIKSLHLLIQNLKEMGLDNEVEMLEQETKMMEKIPGMELTKETKRLRQACFKANYKKRRFLASKSY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120847g00008 214 PANTHER PROTEIN RKD4 103 213 IPR044607 GO:0003700
Stsc120847g00008 214 Pfam RWP-RK domain 106 153 IPR003035 -
Stsc120847g00008 214 ProSiteProfiles RWP-RK domain profile. 93 175 IPR003035 -
Stsc120847g00008 214 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120847g00008 Stsc-Chr120847 66410 67404 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120847g00008 103 214 AtRKD Transcription Factor Family AT5G53040 54.464 2.67e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc120847g00008 RWP-RK 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120847g00008 - - aip:107605887 266.159