Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120846g00023 ATGATGCCTTCACCGCCAATACATCGGAAGAATTTTAATCTGCGAAGGGCAGGTGAAGACCTTTCGATTTTGAATCACAAAAGTTCCCACCTTTCACTCAAGAGCGGCAGTGGCACAGTTGCTTCTTTCAGACACCTTTTCTTGGACTTGAACGGTCGAACACACCTCTTCACTGTTCATTCTTCACCGCAAATGGCAAAGGGTTGCACAAACAATGATTATGAAGAGGCTAGGAAACAAAGGCTAGAAGAAAACAAGAAGCGCTTTGAGGATTTGGGAATTTCAACAATTTCGAAGAACTTGTCTGAAATTGCAAGTTCCGTCAAGAAGTCTCCGCATCGTTCTCCTAAACCAAAATCTAAGTGTGATGTTGTGGTCGAACCAAGGCGATCTTCTCGCGTACGTAACCCAGTTACATACTCTGAAGATAGGTCAAGGTCAAGTTCATCATGGGGAAGTTATATTGCAAGGCCTCTACATGAAATCAAAGAAGCTACAAATGAACAAAGAGCTCGAGCTTTGGAGGCCGCGGAGAAACTCCAAAGCAATTTGCAGTCTGAGAATCCATCATTTATTAAGTCGATGCTCCGGTCTCATGTTTATAGTTGCTTTTGGTTGGGTCTTCCTTTGAGATTTTGTGCAAAACATCTCCCAAAAACTGTATGTAACATGATTTTAGAGGATGAAGCTGGTAAAGAATATGATGCTGTTTTCATTGGCAATAGAAGTGGACTTAGTGGTGGCTGGAGAGGATTTGCATTGGAGCATAAGCTCAATGATGGTGATGCACTTGTTTTTGAATTGACTGAAAAAACAAGATTTAAGGTTTATAGAATTAGAGCATTTCCCGATTCAGCTGAAGAAGATGAAAAGCAGAATTTGAAGGAAGAAGGGAACAAGCGTGTGAAAAAAGCACCAAAAGCTAATAGCAATTCCGAATCAGAATCCAACAAGACGAAAAAGGGCATTGCACGTAAAACTGATGAAGTAGAGTGTTCCAAGGATAACTTGCCAGAAAGTAACGCTGACATTGAAGTTAAACCACCGGAAGTGAAGCTAAGTTATAGAACTAGGTTTACCCGGAAGAAAGTGCAAGAGAAATCTAAAGGGACAGCACAAATTGAAAATGGAGAACCAAAGGAAGCCATGAAGCCTAAATCTCAAGGAAACAAGACAAAAAAGTCAAAAGAAAGTATTGTTCATGAAATTGATACCTCGGACAATGCAATTGATAACTCAGACAATGCTCAACAGATTCTTTCCGAAAATGATCCTGTCGAACCAAAAGGTGCGAGCCAAAGCAATGAAAAACAGATTGTTCAAGATGGGGGACCAGTCAAAAAAAGCAAAAGTGTTTCAAAACCTAGAAAAAAGCCAGCTCTAAAGCTTTTCAGGAAGAGGGTATAG 1407 0.4051 MMPSPPIHRKNFNLRRAGEDLSILNHKSSHLSLKSGSGTVASFRHLFLDLNGRTHLFTVHSSPQMAKGCTNNDYEEARKQRLEENKKRFEDLGISTISKNLSEIASSVKKSPHRSPKPKSKCDVVVEPRRSSRVRNPVTYSEDRSRSSSSWGSYIARPLHEIKEATNEQRARALEAAEKLQSNLQSENPSFIKSMLRSHVYSCFWLGLPLRFCAKHLPKTVCNMILEDEAGKEYDAVFIGNRSGLSGGWRGFALEHKLNDGDALVFELTEKTRFKVYRIRAFPDSAEEDEKQNLKEEGNKRVKKAPKANSNSESESNKTKKGIARKTDEVECSKDNLPESNADIEVKPPEVKLSYRTRFTRKKVQEKSKGTAQIENGEPKEAMKPKSQGNKTKKSKESIVHEIDTSDNAIDNSDNAQQILSENDPVEPKGASQSNEKQIVQDGGPVKKSKSVSKPRKKPALKLFRKRV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120846g00023 468 SMART B3_2 191 285 IPR003340 GO:0003677
Stsc120846g00023 468 MobiDBLite consensus disorder prediction 450 468 - -
Stsc120846g00023 468 MobiDBLite consensus disorder prediction 117 140 - -
Stsc120846g00023 468 Coils Coil 72 92 - -
Stsc120846g00023 468 MobiDBLite consensus disorder prediction 105 150 - -
Stsc120846g00023 468 Coils Coil 163 183 - -
Stsc120846g00023 468 SUPERFAMILY DNA-binding pseudobarrel domain 184 280 IPR015300 -
Stsc120846g00023 468 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 100 281 IPR044837 -
Stsc120846g00023 468 MobiDBLite consensus disorder prediction 409 440 - -
Stsc120846g00023 468 Gene3D - 165 282 IPR015300 -
Stsc120846g00023 468 Pfam B3 DNA binding domain 191 276 IPR003340 GO:0003677
Stsc120846g00023 468 ProSiteProfiles B3 DNA-binding domain profile. 191 282 IPR003340 GO:0003677
Stsc120846g00023 468 MobiDBLite consensus disorder prediction 318 369 - -
Stsc120846g00023 468 MobiDBLite consensus disorder prediction 287 468 - -
Stsc120846g00023 468 MobiDBLite consensus disorder prediction 287 308 - -
Stsc120846g00023 468 CDD B3_DNA 189 277 IPR003340 GO:0003677
Stsc120846g00023 468 MobiDBLite consensus disorder prediction 379 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120846g00023 Stsc-Chr120846 229366 235912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120846g00023 74 277 B3 DNA Binding Superfamily AT5G58280 50.410 3.95e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc120846g00023 B3 1.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120846g00023 - - adu:107458051 626.32