Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120846g00011 ATGATATCCAACAGAATGCTCTTTTGGCTGACTTGCTTTGTCATTTTTCTTTTTTCCATCATAACTGTCCATTATACCAACCCTCCTTCGTCCTCTGACGCCATAACCATTGTTAGTTCTCAAGACGGTTTCGATTTTCAGCTCAGTATATTTAGTAAAATTATAAAGCTTAGTGGTGCCCAAGATCTTTTGTCCCTGATAACAAGTTTTTCAAGGAGACATCATCACCGGAGACACAAAACCAAATGTGACCCCTCCAAATGGAATTCCACCCTTATTCAAGATTACAATGTGTCTAGAGTTTTCACCGTTGACTTAAAGGGTTGTGCTAACTTTAGTAGTGTGCAGAACGCAGTTGATGCTGTTCCTCAATTTAGAACTGATACCACCCTTATCATAATTGATTCTGGTATATACAGGGAGAAGGTGGTGGTGCAGGCCAACAAAACAAACTTGATAATTCAAGGTCAAGGATATCTTAACACAATCATAGAGTGGAATGACACAGCGAATTCCACCGGAGGCACTCCCGATAGCTACTCCTTTGCTGTCTTTGCTTCTAAGTTCACCGCCTATAATATCAGCTTTAAGAACGCAGCGCTTCCACCTTTGCCGGGAGAGGTCGGGGCACAGGCAGTGGCACTTAGAGTTACCGGTGATCAAGCTGCTTTCTATGGTTGCGGATTTTATGGTGCACAAGACACACTCAATGATGATATGGGGAGACATTATTTTAAAGAATGTTTCATCCGAGGGTCCATTGATTTCATATTTGGGAATGGTAGATCACTTTACGAGGATTGTGTGATTGACTCGATAGCAAAAGAAGGTTGGGTTGGAGTTAGCGGATGCATCACCGCACATGGCCGGCAATCGAAGAGTGACGAAACAGGGTTTTCCTTTGTGAATTGCAGCATCCTTGGAAGTGGCCAAGTCTGGCTTGGAAGAGCTTGGGGACCCTATGCCACCGTCATATTCTCAAAAACATTCATGTCCAACGTTGTTGCTCCTGAAGGATGGAACGATTGGAAAGATCCCTCTAGAGACAAGACCGTGTTCTTTGGGGAGCACCGTTGTACGGGAGCTGGAGCAAATTTTACATCTAGAGTCTCTTACGCCAAACAACTCACCGATGATGAAGCAATCTACTACACCAATATTTCATACATTGATGGAAATGATTGGCTTCTTAATTAA 1197 0.4311 MISNRMLFWLTCFVIFLFSIITVHYTNPPSSSDAITIVSSQDGFDFQLSIFSKIIKLSGAQDLLSLITSFSRRHHHRRHKTKCDPSKWNSTLIQDYNVSRVFTVDLKGCANFSSVQNAVDAVPQFRTDTTLIIIDSGIYREKVVVQANKTNLIIQGQGYLNTIIEWNDTANSTGGTPDSYSFAVFASKFTAYNISFKNAALPPLPGEVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDMGRHYFKECFIRGSIDFIFGNGRSLYEDCVIDSIAKEGWVGVSGCITAHGRQSKSDETGFSFVNCSILGSGQVWLGRAWGPYATVIFSKTFMSNVVAPEGWNDWKDPSRDKTVFFGEHRCTGAGANFTSRVSYAKQLTDDEAIYYTNISYIDGNDWLLN 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120846g00011 398 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 91 396 - -
Stsc120846g00011 398 Gene3D - 95 398 IPR012334 -
Stsc120846g00011 398 FunFam Pectinesterase 96 398 - -
Stsc120846g00011 398 Pfam Pectinesterase 104 393 IPR000070 GO:0030599|GO:0042545
Stsc120846g00011 398 SUPERFAMILY Pectin lyase-like 98 396 IPR011050 -
Stsc120846g00011 398 ProSitePatterns Pectinesterase signature 2. 250 259 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120846g00011 Stsc-Chr120846 82443 84746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120846g00011 77 396 Carbohydrate Esterase AT1G05310 52.322 1.22e-118 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120846g00011 - - gmx:100802034 624.394