Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc120846g00005 | ATGAACAACGCCAAGAAGGAAACTGCACCTCTTGTAGGTAATTATGTTACCCCTCTTGTTATCTCCGCCATTGGCATACTCGCCACCGTTCTTGTACTTGCATCCTTCTTCTTCATCTTCTGGTGGCTTTACGTTAGGCCACATCGTCGTCATCCAACCATTAACAACACTTATACTTCTAGAGCCCATATTAGAAATAATGGGGTCGACGAGGATACCCTCAAAAAGATTCCCCTTATTACCTTCTCGTCCCAAGACTACAACCCGGGGCAAATAGAACTCGAGTGTTCCATTTGCCTCGGGGAGTTGAAGGATGGGGAGGTACTAAGGTTGTTGCCCGTTTGCAGCCATGCGTTTCACGTTCCCTGCATTGACGAATGGTTCAAGGAACATAACAATTGTCCCTATTGTCGCTCGCTCATCGTCTACGAAAACGATGAGCCAGCGGACAATAGGGAAATTAGTGACGACCAAGAAAGGGTCGTCACGAATGGCAATGATGGCGATGATAATAACAATAATAACAGAATTACCACCGAGGATGATGATGAGAATAATGGTGTTAGTAGTAATTCGTCCAATTCAACAAACTCGAGATTTCAACGACCTAAACGCCCTTATTGCGTACCACTATGTCCCATGAAGAAGAAGCCACGTTCATTGGGGATGATGTTGAAGAGGTCCTTCTCTATGGATCAATCATCATATCTATATGTTGCTGTTACCATACAACAAAGAGATCATCAAAGTGTTCTTCATGAAGGAGTAGTAGAGGCTTCAACCTCTTCTACTCCTCCTCCTTCTTCTTCACCGAGTAATAATAATAATAAAGGTGTTATGGTGATGAACCGCTATAAATCAAGATCATTATCAATGAAGCATATTGATCAAATGTCTAAGGCGCTCGTGAGATCCTTCTCGCAATTTCGGAATGGTAGTTTTGATCAGAGATCCAATAATGTCATTCTTCCCTATTGA | 978 | 0.4274 | MNNAKKETAPLVGNYVTPLVISAIGILATVLVLASFFFIFWWLYVRPHRRHPTINNTYTSRAHIRNNGVDEDTLKKIPLITFSSQDYNPGQIELECSICLGELKDGEVLRLLPVCSHAFHVPCIDEWFKEHNNCPYCRSLIVYENDEPADNREISDDQERVVTNGNDGDDNNNNNRITTEDDDENNGVSSNSSNSTNSRFQRPKRPYCVPLCPMKKKPRSLGMMLKRSFSMDQSSYLYVAVTIQQRDHQSVLHEGVVEASTSSTPPPSSSPSNNNNKGVMVMNRYKSRSLSMKHIDQMSKALVRSFSQFRNGSFDQRSNNVILPY | 325 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc120846g00005 | 325 | SUPERFAMILY | RING/U-box | 73 | 144 | - | - | |
Stsc120846g00005 | 325 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 142 | IPR013083 | - | |
Stsc120846g00005 | 325 | SMART | ring_2 | 96 | 137 | IPR001841 | - | |
Stsc120846g00005 | 325 | ProSiteProfiles | Zinc finger RING-type profile. | 96 | 138 | IPR001841 | - | |
Stsc120846g00005 | 325 | MobiDBLite | consensus disorder prediction | 151 | 202 | - | - | |
Stsc120846g00005 | 325 | Pfam | Ring finger domain | 95 | 138 | IPR001841 | - | |
Stsc120846g00005 | 325 | CDD | RING-H2_EL5-like | 95 | 138 | - | - | |
Stsc120846g00005 | 325 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 22 | 300 | - | - | |
Stsc120846g00005 | 325 | MobiDBLite | consensus disorder prediction | 253 | 279 | - | - | |
Stsc120846g00005 | 325 | SMART | FANCL_C_2 | 92 | 145 | - | - | |
Stsc120846g00005 | 325 | MobiDBLite | consensus disorder prediction | 184 | 202 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc120846g00005 | Stsc-Chr120846 | 51366 | 52343 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc120846g00005 | 18 | 276 | C3H Transcription Factor Family | AT3G03550 | 30.241 | 7.18e-25 | 101 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc120846g00005 | - | - | aip:107626991 | 340.887 |