Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120846g00005 ATGAACAACGCCAAGAAGGAAACTGCACCTCTTGTAGGTAATTATGTTACCCCTCTTGTTATCTCCGCCATTGGCATACTCGCCACCGTTCTTGTACTTGCATCCTTCTTCTTCATCTTCTGGTGGCTTTACGTTAGGCCACATCGTCGTCATCCAACCATTAACAACACTTATACTTCTAGAGCCCATATTAGAAATAATGGGGTCGACGAGGATACCCTCAAAAAGATTCCCCTTATTACCTTCTCGTCCCAAGACTACAACCCGGGGCAAATAGAACTCGAGTGTTCCATTTGCCTCGGGGAGTTGAAGGATGGGGAGGTACTAAGGTTGTTGCCCGTTTGCAGCCATGCGTTTCACGTTCCCTGCATTGACGAATGGTTCAAGGAACATAACAATTGTCCCTATTGTCGCTCGCTCATCGTCTACGAAAACGATGAGCCAGCGGACAATAGGGAAATTAGTGACGACCAAGAAAGGGTCGTCACGAATGGCAATGATGGCGATGATAATAACAATAATAACAGAATTACCACCGAGGATGATGATGAGAATAATGGTGTTAGTAGTAATTCGTCCAATTCAACAAACTCGAGATTTCAACGACCTAAACGCCCTTATTGCGTACCACTATGTCCCATGAAGAAGAAGCCACGTTCATTGGGGATGATGTTGAAGAGGTCCTTCTCTATGGATCAATCATCATATCTATATGTTGCTGTTACCATACAACAAAGAGATCATCAAAGTGTTCTTCATGAAGGAGTAGTAGAGGCTTCAACCTCTTCTACTCCTCCTCCTTCTTCTTCACCGAGTAATAATAATAATAAAGGTGTTATGGTGATGAACCGCTATAAATCAAGATCATTATCAATGAAGCATATTGATCAAATGTCTAAGGCGCTCGTGAGATCCTTCTCGCAATTTCGGAATGGTAGTTTTGATCAGAGATCCAATAATGTCATTCTTCCCTATTGA 978 0.4274 MNNAKKETAPLVGNYVTPLVISAIGILATVLVLASFFFIFWWLYVRPHRRHPTINNTYTSRAHIRNNGVDEDTLKKIPLITFSSQDYNPGQIELECSICLGELKDGEVLRLLPVCSHAFHVPCIDEWFKEHNNCPYCRSLIVYENDEPADNREISDDQERVVTNGNDGDDNNNNNRITTEDDDENNGVSSNSSNSTNSRFQRPKRPYCVPLCPMKKKPRSLGMMLKRSFSMDQSSYLYVAVTIQQRDHQSVLHEGVVEASTSSTPPPSSSPSNNNNKGVMVMNRYKSRSLSMKHIDQMSKALVRSFSQFRNGSFDQRSNNVILPY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120846g00005 325 SUPERFAMILY RING/U-box 73 144 - -
Stsc120846g00005 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 142 IPR013083 -
Stsc120846g00005 325 SMART ring_2 96 137 IPR001841 -
Stsc120846g00005 325 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Stsc120846g00005 325 MobiDBLite consensus disorder prediction 151 202 - -
Stsc120846g00005 325 Pfam Ring finger domain 95 138 IPR001841 -
Stsc120846g00005 325 CDD RING-H2_EL5-like 95 138 - -
Stsc120846g00005 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 300 - -
Stsc120846g00005 325 MobiDBLite consensus disorder prediction 253 279 - -
Stsc120846g00005 325 SMART FANCL_C_2 92 145 - -
Stsc120846g00005 325 MobiDBLite consensus disorder prediction 184 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120846g00005 Stsc-Chr120846 51366 52343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120846g00005 18 276 C3H Transcription Factor Family AT3G03550 30.241 7.18e-25 101