Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120846g00003 ATGGAAGAGGTTACTTCGAATTCCATTGTCAACATGTTATACCTTTCGGCACGAAAACACTCCATGAAGTTCTATTCCCCTCTAGTGCATCCTTTATTTTTTATCATTGTCATTCTTTCTCCTCTAGTATTTGCTGACCTAAGTTCCGATAAACAAGCCCTTCTTGATTTTGCTGCGGCTGTCCCCCACCGTCGTAACCTTAGGTGGAATTCATCTACAGAAGTTTGTACATCTTGGATAGGTGTCACTTGCAATTCAAATGGCACTCGTGTTGTTTCTCTCCGGCTCCCTGGAATTGGACTAGTTGGAACCATCCCGGCTGATACACTCGGCAAGCTTGATGCACTTAGAAATCTAAGTCTTCGCTCAAACCTACTCGTCGGAAGCCTACCTGCCGATATTACTTCTCTTCCATTACTCCAAGACCTCTACCTTCAGCATAATAACCTTTCTGGTAATATACCTACTTCATTGCCACCCCAACTCAATGTACTTGATTTGTCTTACAATTCTTTCACTGGCGGTATTCCAAAGGCACTACAGAATTTAACACAGCTAACAAGACTGAGCCTACAGAACAATTCCCTATCGGGAGGGATACCGAATCTCAATGTTGCTAAGCTCAGGCATTTGAATTTAAGCTACAACCACTTCAATGGCTCTATCCCTCCTGTTCTTAAGAACTTCCCGAATTCTTCCTTCGAAGGGAACTCTCACTTATGTGGATTGCCTCTAAAGCCATGCTCTGTGGCTCCCCCTGAACCTTCTCCGTCAGCACCACCTACACCGTCACCTCATGTAAGAAAAAGCTCCAAACATAAACTGAGTAAGGCAGCTATAATAGCAATCGCTGTTGGTGGAGGTGTGCTTCTGTTATTGTTAGTTCTTGTCATTGTCCTTTGCTGTTGTTTGAAGAAAAAAGATGATGGAAATGAAAGGCCTAGTAGTGTAAGTAAAGGGAAGGGTCCTAGCGTCGGTGGAAGGGGTGAGAAGCCGAAGGAAGAGTTTGGAAGTGGGGTACAAGAACCTGAGAAGAACAAGCTGGTTTTCTTTGAGGGAAGTTCATATAACTTTGATCTCGAGGATTTGTTGAGGGCTTCGGCTGAAGTTTTAGGGAAGGGTAGTTACGGTACTGCATACAAAGCTGTGTTGGAGGAGTCAACAACCGTCGTAGTAAAACGGTTGAAAGAAGTTGTGGTGAGCAAAAAGGACTTTGAACAGCAGATGGAGATTATAGGAAGAGTCGGACAGCACCCGAATGTCTTGCCACTTCGCGCATATTATTATTCAAAGGACGAGAAGCTTTTGGTTTATGATTATGTCCCAAGTGGCAATTTATCAACACTCTTGCACGCTAATAGGGCAAGTGGAAGAACTCCATTAGATTGGGACTCAAGATTAAAACTCTCACTTGGGATTGCCAAAGGAATTGCTCACATACATTCTGTCGGCGGTCCAAAATTCACTCATGGAAATGTCAAAGCCTCGAATGTCCTCATCAGCCAAGAGAATGACGGGTACATTTCCGATTTCGGGCTGACCCCGCTCATGAATGTTCCCACAGCTCCTACTAGAGCTGCAGCAAAGGTTCCGGATATGAGACCTAGCATGGAGGAGGTAGTGAGGATGATCGAAGAGATCCGGCTATCTGACTCTGAGAACCGGCCGTCTTCCGAAGAAAATAAATCCAAGGATTCAAATGTTCAAACTACTCCATAA 1719 0.4439 MEEVTSNSIVNMLYLSARKHSMKFYSPLVHPLFFIIVILSPLVFADLSSDKQALLDFAAAVPHRRNLRWNSSTEVCTSWIGVTCNSNGTRVVSLRLPGIGLVGTIPADTLGKLDALRNLSLRSNLLVGSLPADITSLPLLQDLYLQHNNLSGNIPTSLPPQLNVLDLSYNSFTGGIPKALQNLTQLTRLSLQNNSLSGGIPNLNVAKLRHLNLSYNHFNGSIPPVLKNFPNSSFEGNSHLCGLPLKPCSVAPPEPSPSAPPTPSPHVRKSSKHKLSKAAIIAIAVGGGVLLLLLVLVIVLCCCLKKKDDGNERPSSVSKGKGPSVGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEESTTVVVKRLKEVVVSKKDFEQQMEIIGRVGQHPNVLPLRAYYYSKDEKLLVYDYVPSGNLSTLLHANRASGRTPLDWDSRLKLSLGIAKGIAHIHSVGGPKFTHGNVKASNVLISQENDGYISDFGLTPLMNVPTAPTRAAAKVPDMRPSMEEVVRMIEEIRLSDSENRPSSEENKSKDSNVQTTP 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120846g00003 572 MobiDBLite consensus disorder prediction 545 562 - -
Stsc120846g00003 572 MobiDBLite consensus disorder prediction 545 572 - -
Stsc120846g00003 572 FunFam Leucine-rich repeat receptor-like protein kinase 160 248 - -
Stsc120846g00003 572 SUPERFAMILY L domain-like 60 248 - -
Stsc120846g00003 572 PANTHER OS05G0588300 PROTEIN 33 519 - -
Stsc120846g00003 572 Gene3D Transferase(Phosphotransferase) domain 1 441 527 - -
Stsc120846g00003 572 Gene3D Phosphorylase Kinase; domain 1 333 440 - -
Stsc120846g00003 572 SUPERFAMILY Protein kinase-like (PK-like) 369 523 IPR011009 -
Stsc120846g00003 572 MobiDBLite consensus disorder prediction 309 340 - -
Stsc120846g00003 572 ProSiteProfiles Protein kinase domain profile. 365 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120846g00003 572 MobiDBLite consensus disorder prediction 326 340 - -
Stsc120846g00003 572 MobiDBLite consensus disorder prediction 251 270 - -
Stsc120846g00003 572 Gene3D Ribonuclease Inhibitor 204 251 IPR032675 -
Stsc120846g00003 572 Pfam Leucine Rich Repeat 207 229 IPR001611 GO:0005515
Stsc120846g00003 572 Pfam Leucine Rich Repeat 162 183 IPR001611 GO:0005515
Stsc120846g00003 572 Gene3D Ribonuclease Inhibitor 47 203 IPR032675 -
Stsc120846g00003 572 FunFam pollen receptor-like kinase 1 333 440 - -
Stsc120846g00003 572 FunFam Leucine-rich repeat receptor-like protein kinase 49 159 - -
Stsc120846g00003 572 ProSitePatterns Protein kinases ATP-binding region signature. 371 393 IPR017441 GO:0005524
Stsc120846g00003 572 Pfam Leucine rich repeat N-terminal domain 48 85 IPR013210 -
Stsc120846g00003 572 Pfam Protein tyrosine and serine/threonine kinase 369 517 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120846g00003 Stsc-Chr120846 28006 30364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120846g00003 526 569 Receptor kinase-like Gene Family AT5G58300 67.391 2.40e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc120846g00003 PK_Tyr_Ser-Thr 3.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120846g00003 - - gmx:100818344 747.658