Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120846g00001 ATGTCCGTACAGTCAAGACTGAAGTTGAAGCTCCCCCCCTCAAGCTCAAATTTTGAGAAGACGAGGCGCAAAACCAAAAACAAGGTGGTTCGGATCATCCTCACCGACCACGACGCCACCGATTCCGATTCTTCAAGCGACGAAGCACACCAAAACACCACACGCAAAAAACTCAAAAGAGAGATCACCCAAATAACCATGCACCTTCCCTCACCCTATTCCTCCACCACCATTTCTTCCTCTTCTTCCCCTTCTCCTTCTCCTTCAACTTCCTCTTCTACCTTTTCTTCTCTCTCTTCTGATTCATTGCAACAGAGGACCAGGCCATGCAAGAGACCCAAGAAACCGCAACTCCCTTCGGCGGAGCGCCACCGCAACAGGTTCCGCGGTGTCAGGCAGCGGCCGTGGGGACGGTGGGCCGCCGAGATCCGTGACCCGACCCAAAGAAAGCGGGTCTGGCTTGGAACCTTTGACACGGCGGAGGAGGCCGCCACCGAGTACGACCGTGCGGCGCTGAAGCTTAAGGGTCCAAACGCGGTCACGAACTTTCCGGTTAGTTCTCCGCCGGAGGTTACGGCGGTCGATGACGGTGTAGCGGCGTTTTCCGACGCTGTCGCGCTGTCTCCGACTTCTGTTTTGCCGTATGACGGTTACTCGACGCCGTTCGACGGTTTCCGTTTCGTGGACGCGTTTGGGTTCGACATCGCCGATGAGGCTCCGTTAAGTTTGACGGACGTTGACGTTAACAGCGTTATGCTGACGTGTCAGCGCCTTGATGATGCTAAAGAGGATGAAGCGTTCGGCGAATTTGACCTCGACGAGTTCATCACGTGGCCGTACTAA 843 0.5528 MSVQSRLKLKLPPSSSNFEKTRRKTKNKVVRIILTDHDATDSDSSSDEAHQNTTRKKLKREITQITMHLPSPYSSTTISSSSSPSPSPSTSSSTFSSLSSDSLQQRTRPCKRPKKPQLPSAERHRNRFRGVRQRPWGRWAAEIRDPTQRKRVWLGTFDTAEEAATEYDRAALKLKGPNAVTNFPVSSPPEVTAVDDGVAAFSDAVALSPTSVLPYDGYSTPFDGFRFVDAFGFDIADEAPLSLTDVDVNSVMLTCQRLDDAKEDEAFGEFDLDEFITWPY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120846g00001 280 MobiDBLite consensus disorder prediction 17 63 - -
Stsc120846g00001 280 MobiDBLite consensus disorder prediction 1 130 - -
Stsc120846g00001 280 Gene3D AP2/ERF domain 126 186 IPR036955 GO:0003700|GO:0006355
Stsc120846g00001 280 MobiDBLite consensus disorder prediction 67 106 - -
Stsc120846g00001 280 CDD AP2 127 186 IPR001471 GO:0003700|GO:0006355
Stsc120846g00001 280 PIRSF PTI6 1 280 IPR017392 GO:0003700
Stsc120846g00001 280 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Stsc120846g00001 280 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
Stsc120846g00001 280 SUPERFAMILY DNA-binding domain 127 186 IPR016177 GO:0003677
Stsc120846g00001 280 MobiDBLite consensus disorder prediction 1 16 - -
Stsc120846g00001 280 SMART rav1_2 127 190 IPR001471 GO:0003700|GO:0006355
Stsc120846g00001 280 FunFam Ethylene-responsive transcription factor 2 126 185 - -
Stsc120846g00001 280 Pfam AP2 domain 127 176 IPR001471 GO:0003700|GO:0006355
Stsc120846g00001 280 ProSiteProfiles AP2/ERF domain profile. 127 184 IPR001471 GO:0003700|GO:0006355
Stsc120846g00001 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120846g00001 Stsc-Chr120846 2344 3186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120846g00001 10 218 AP2-EREBP Transcription Factor Family AT4G27950 40.000 1.56e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc120846g00001 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120846g00001 K13434 - gmx:100800489 252.677