LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120845g00040	ATGGCAGCGTGCTTCTTTGGGGAAATGAGTTACGTGAAACCACCAATGTCTGGTGTCATAAAAGGGATGTTCGTTCCAAAACTGAGTGGTCAAGGTGCCACTGGAGATGCCATTGCCCTTTTGGGTGCCCTTATCATGCCGCACAACCTGTTCCTACACTCTGCTCTGGTGCTGTCTAGGAAAATACTCAATTCAGTTCGTGGCATCAATGAAGCGTGTAGATATTTTCTGATAGAGAGTGGGTTCGCACTGTTTGTGGCATTTCTAATCAACGTTGCAGTAATTTCTGTGTCTGGCACTGTTTGCTCATCTTCAAATCTTTCTTCACAAAACGCTGCTCACTGCTCCGATCTCACCCTTGACTCTGCTTCCTTTCTTCTCAAGAATGTGTTGGGAAGGTCGAGTTCAACGATTTATGCGATAGCACTGTTAGCTTCTGGACAAAGTTCCGCTATTACTGGAACCTATGCAGGACAGTACATTATGCAGGGTTTCTTGGACTTAAAGATGAAAAGATGGCTTAGGAACTTGATGACTAGGACCATTGCCATAGCACCAAGCCTTGTTGTCTCCATTATTGGTGGCTCCTCCGGGGCGGGTCGCCTAATCGTCATCGCATCAATGATACTTTCTTTTGAACTTCCATTCGCTTTAATTCCACTCCTTAAGTTTAGTAGCAGTAGTACCAAGATGGGACCTCACAAGAACTCTATGATAATCATTGTGATATCATGGATCCTAGGATTGGGGATCATAGGCATCAATGTGTACTACCTGGTGACTGCCTTCGTGGGTTGGCTAATGCATAATAGTTTGCCAAAGGTGGGAAAAGTGTTCATTGGGATCATAGTGTTTCCTCTGATGGGAATCTATGTGGGCTCAGTTATATACCTAACATTCAGAAAAGACACTGTTCAGACATATATCGAGACCAAGAATAACACAGCAATGCAAACCCATGTGGAAAAGGGCTTCATGAATCCCAATGGTGAGTTAGAGTTGAACCATGGCCCTATCAGAGAAGATTTAGCTGACATCCCACTACCTGAATAA	1053	0.4416	MAACFFGEMSYVKPPMSGVIKGMFVPKLSGQGATGDAIALLGALIMPHNLFLHSALVLSRKILNSVRGINEACRYFLIESGFALFVAFLINVAVISVSGTVCSSSNLSSQNAAHCSDLTLDSASFLLKNVLGRSSSTIYAIALLASGQSSAITGTYAGQYIMQGFLDLKMKRWLRNLMTRTIAIAPSLVVSIIGGSSGAGRLIVIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIIVISWILGLGIIGINVYYLVTAFVGWLMHNSLPKVGKVFIGIIVFPLMGIYVGSVIYLTFRKDTVQTYIETKNNTAMQTHVEKGFMNPNGELELNHGPIREDLADIPLPE	350

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120845g00040	350	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	1	309	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Stsc120845g00040	350	Pfam	Natural resistance-associated macrophage protein	1	237	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Stsc120845g00040	350	PRINTS	Natural resistance-associated macrophage protein signature	207	226	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Stsc120845g00040	350	PRINTS	Natural resistance-associated macrophage protein signature	37	60	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Stsc120845g00040	350	PRINTS	Natural resistance-associated macrophage protein signature	147	166	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Stsc120845g00040	350	PRINTS	Natural resistance-associated macrophage protein signature	175	192	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120845g00040	Stsc-Chr120845	205384	212737	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120845g00040	1	350	Inorganic Solute Cotransporters	AT1G15960	58.571	6.41e-139	403

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120845g00040	K21398		-	gmx:100787785	569.696

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