Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120845g00038 ATGGAGGACCCTGGGAAGAGGATTACTGTCTCTGATTGTCAGGGATTGTTGGTTGCAGTTGACAAAGAAGATGTAGCTCGGATTTTCCGGTTCCTTGATCACTGGGGAATCATCAATTACTGTGCTCGGGAGTCATGTCATGAGCCATTGAATGATGCATCCTTCCTGAAGGAGGAGACAAGCGGAGAAGTCCGTGTGCCCTCAGAGTTTCTAAAATCCATAGATAGTCTGATAAGTTTTGACATGCCCGAGTGTAAGCTCAAAGCAGAAGAAATTTATTCATCATTGACAATGCACAATGCTGATGTCACTGATCTGGACAGCAGGATATGGGAACATCTGTCTGAAAATCATTGCCATTGTTGTTCTCATCCTCTTCCTGCTGTATACTATCAGTCGCAAAAAGAGGTTGATATTTTACTTTGCACCGGCTGCTTTCATGATGGAAGATTTGTTGTCGGACATTCAAGCATAGATTTTGTAAGGGTGGATTCATCCAGGGATTATGGTGAGGGAGATGGGGATAGTTGGACTGATCAAGAAACTTTGCTGCTGCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCTGAACATGTTGGGACCAAGTCAAAAGCCCAATGCATTCTTCATTTTCTTCGTCTACCAATGGAAGACTTCGTCTACCAATGGAAGACGGTAAATTAG 696 0.4282 MEDPGKRITVSDCQGLLVAVDKEDVARIFRFLDHWGIINYCARESCHEPLNDASFLKEETSGEVRVPSEFLKSIDSLISFDMPECKLKAEEIYSSLTMHNADVTDLDSRIWEHLSENHCHCCSHPLPAVYYQSQKEVDILLCTGCFHDGRFVVGHSSIDFVRVDSSRDYGEGDGDSWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDFVYQWKTVN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120845g00038 231 Gene3D - 173 223 - -
Stsc120845g00038 231 Gene3D - 1 44 IPR036388 -
Stsc120845g00038 231 ProSiteProfiles Zinc finger ZZ-type profile. 113 168 IPR000433 GO:0008270
Stsc120845g00038 231 FunFam SWI/SNF complex subunit SMARCC2 isoform C 172 223 - -
Stsc120845g00038 231 CDD SANT 176 218 IPR001005 -
Stsc120845g00038 231 Pfam Myb-like DNA-binding domain 176 218 IPR001005 -
Stsc120845g00038 231 ProSiteProfiles SWIRM domain profile. 1 49 IPR007526 GO:0005515
Stsc120845g00038 231 ProSiteProfiles SANT domain profile. 172 223 IPR017884 -
Stsc120845g00038 231 ProSiteProfiles Myb-like domain profile. 176 219 IPR001005 -
Stsc120845g00038 231 SUPERFAMILY Homeodomain-like 2 47 IPR009057 -
Stsc120845g00038 231 PANTHER SWI/SNF COMPLEX-RELATED 166 224 - -
Stsc120845g00038 231 SUPERFAMILY Homeodomain-like 174 225 IPR009057 -
Stsc120845g00038 231 SMART sant 173 221 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120845g00038 Stsc-Chr120845 202017 204360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120845g00038 137 215 EF-hand Containing Proteins AT3G07740 34.483 2.43e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc120845g00038 Myb_DNA-binding 2.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120845g00038 K11649 - gmx:100780440 380.948