Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120845g00018 ATGTTCCCATCATCATCACACAGTCTGGATCACCACCACATCATGCTGCACCACCACCACCATATTCCTATCCCCTCTCTACCTATGCCTATGCCTATGCCTATGCCGCCACTTCCATCATCAACAAGATGGAAGCCTACAATTGAGGTAGCCCCTAACTGCCCTCGCTGCGCTTCCACCAACACCAAATTCTGTTACTACAACAACTATAGCCTCTCCCAGCCTAGATATTTTTGCAAGGCTTGCCGCCGATACTGGACTAAAGGCGGTTCCCTCCGTAACGTCCCTGTCGGCGGTGGATGCCGCAAGAATCGCCGCTCCAAGCCCGCCAGGCACCAAACTGATCACCACCAACAACACCGCTGCTCCACGAATTCTGATGAAGGAGAGTACTCATCTTCTGCTGACGGTGATGGAAGTGGTGGTGCTGATCAACACTCATCATCGTCACGTGAAATAGACATGGCGGTTGTGTTTGCTAACTTCTTGAACCAAACACCTGTAAGTTCCGGCGGTGGTGGTGGTGAGGATCACGGTGTATCGTCTTCCTCGAGCGGTGAGACTGAGAAGAACTACGATGAAACTGTTCCTGTTGTAACGGAGTCTCAAGATCATGATGATTTAGGTGGTTTATGCGTGGAGGTGGAGCCTTCTTCGTTTGAACAAGAATTGAGTCTGATGAGTGGGATCGAGTTGGATGGATTTGATGATGTGGTCCATGATGATCATGTGTGGTCTCATCACCATCATCATCATGATCATGATGGTGTTGCTACATGGCAACCACCACCACTACCACTACCACCAACAACAACATCAATGATGCATCAGATGCAGATGGAGGAGTTGGAATTCGATGATGAGTTGTTGATGATGCCATCTTCCATGAACTTAATGAGTGACAGTTCTTGGAACACCAATAATTGGAGTTCCTTTGATCTTTCCACTATCGAAGGCCTTAATCAATAA 969 0.4819 MFPSSSHSLDHHHIMLHHHHHIPIPSLPMPMPMPMPPLPSSTRWKPTIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRSKPARHQTDHHQQHRCSTNSDEGEYSSSADGDGSGGADQHSSSSREIDMAVVFANFLNQTPVSSGGGGGEDHGVSSSSSGETEKNYDETVPVVTESQDHDDLGGLCVEVEPSSFEQELSLMSGIELDGFDDVVHDDHVWSHHHHHHDHDGVATWQPPPLPLPPTTTSMMHQMQMEELEFDDELLMMPSSMNLMSDSSWNTNNWSSFDLSTIEGLNQ 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120845g00018 322 MobiDBLite consensus disorder prediction 167 194 - -
Stsc120845g00018 322 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Stsc120845g00018 322 MobiDBLite consensus disorder prediction 96 150 - -
Stsc120845g00018 322 Pfam Dof domain, zinc finger 52 106 IPR003851 GO:0003677|GO:0006355
Stsc120845g00018 322 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Stsc120845g00018 322 MobiDBLite consensus disorder prediction 125 150 - -
Stsc120845g00018 322 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 45 203 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120845g00018 Stsc-Chr120845 85448 86416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120845g00018 17 178 C2C2-Dof Transcription Factor Family AT1G21340 44.970 1.27e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc120845g00018 zf-Dof 4.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120845g00018 - - adu:107460580 295.819