Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120845g00016 ATGTCAAGAAATGCATTAACTCTTCTTATCCTCTTCCTTCTTAATGTCTTGCTTCTTCCACCACAAATCTCTTCTCTGAACCAAGAAGGACTCTCTCTACTTTCATGGCTTTCAACCTTCAATTCCTCTAACTCTGCTACTACTACTACTTCCTTCTTCTCTTCATGGGATCCAACTCATGAAAATCCATGCAGATGGGACTACATAAAGTGTTCCAAACAAGGCTTTGTCTCAGAGATCATAGTACAATCCATTGATCTTCATAGCAGCTTTCCAACACAGCTTCTTTCCTTTAACCACCTTAAAACTCTTGTAATCTCCAATGGAAACCTCACAGGTGAGATTCCAAGCTCACTGGGAAACTTAACCTCTCTTGTTACCTTGGACCTTAGCTTCAACACTCTATCAGGAACCATTCCAGATGAAATAGGACAGCTATACAACCTTCAATGGTTGTCCTTGAATTCAAACTCCTTAAATGGCGAAATTCCAACCACAATTGGAAACCTTACAAAGCTTCATCAGCTAGCACTCTATGACAACCAGCTCTCTGGAATGATCCCGGGCGAAATAGGCCAGCTGGCGAATCTTGAAACTCTTCGAGCCGGAGGCAATCCAGGCATCCATGGCGAAATTCCAATGCAGATATCAAACTGCAAGGCTCTAGTTTTTCTTGGACTCGCAGATACCGGAGTTTCCGGGGAGATTCCAGCAACAATAGGAGAACTCACCAATCTTCAAACACTCTCAGTATACACTGCACATCTCACAGGTCACATTCCACCAGAGATTCATAACTGTTCATCTTTGGAAAACTTGTTCCTATATGAAAACCAGCTTTCAGGGATGATCCCTGAAGAGTTAGGATCTATGCAAAGCCTTAAGAGAGTGTTGCTGTGGCAGAACAATCTAACTGGTAGAATTCCAGAGAGTCTTGGAAACTGTACTGATCTGAAGGTGATAGATTTCTCTTTGAATTCTCTGGCTGGTGAATTACCTTTGAGTCTCAGTAATCTTCTCTCATTAGAGGAGCTTCTTTTGTCTGATAACAACTTTACTGGAGAAATTCCATCCTATATTGGAAACTTTTCGAGGCTGAAGCAACTCGAATTGGATAACAACAAGTTCACTGGAGAGATTCCAACTGTCTTGGGGAAGCTCAAGGAGCTTACTCTCTTCTTTGCCTGGCAGAATCAGCTCCATGGAAGCATACCAGCTGAACTCTCTGGCTGCAAGAAGCTTGAAGCCATTGATCTTTCACATAACTTCCTCACTGGTTCAATTCCCCGATCACTGTTTCATCTAGAGAATTTAACTCAGTTGTTGTTGATATCAAACAGGCTTTCAGGCCAAATTCCACCAGATATTGGCAGCTGCAAAAGGTTGAGCAGGTTGCGGCTGGGATCGAACAATTTCACTGGTCATATTCCACCAGAAATAGGCCTTTTGAACCAGCTGAGCTTTCTCGAGTTATCGGATAATATGATCAGTGGAGATATTCCCTCTGAGATAGGTAACTGTGCTAATCTAGAGATGCTTGATCTGCACGGCAATGCCCTGCAAGGAATAATTCCTTCTTCAGTAGAATTCCTGGTTTCTCTGAATGTTTTAGATCTTTCTGCAAATCAAATAACTGGAAGCATTCCTGGAAACTTGGGAAAACTTGCATCTCTAAACAAGTTGATTCTAAGTGGAAACCATATCACTGGTTTGATTCCTGTGTCACTAGCCCTCTGCATGAATCTTCAGTTGCTGGATATAAGTAATAACATGATCTCTGGTTCGATTCCTAATGAGATTGGCCGCTTGCAAGGCCTAGACATCCTCTTGAACTTGAGTTGGAATTCTCTAACAGGCACCATTCCAGATACCTTTACAAATCTTTCAAAACTTTCCATATTAGACCTCTCTCACAACAAGCTCTCAGGCACCCTCAGTGTGCTAAGCAGTCTTGATAATCTTGTCTCTCTAAATGTCTCCTACAATAGATTTTCTGGTTCTCTTCCCGACACCAAGTTCTTCCGTGATCTCCCTCCGGCTGCATTTGCCGGCAACCCTGAGCTTTGCCTTAACAAATGTCACCTGGAGGGAGATCGCCAAGAAGCAAAGATAGTAAGGAACATCCTTATCTACACTTTCCTTGGTGTTATTTTAACATCTATTGTTGTAACCTTGGGAGTAATCTTAGCTCTCAGAATTCAAGGGGATACTTTTGGGAAAAATTTTGAGGAAGCTGGTGAGCTTGAATGGGCTTTCACTCCATTCCAAAAGCTCAACTTCTCTATCAATGACATTGTCACAAAGCTAACGGATTCAAACATTGTGGGGAACGGTTGTTCGGGGATTGTTTATCGAGTAGAGACTCCAATGAAACAGTTAATTGCAGTTAAGAAATTGTGGCCAATAAAGAGCGATGAGCCGCCACCGGAGAGAGATCAGTTTGCTGCTGAAGTTCAGGCTCTTGGATCAATAAGGCACAAGAACATTGTAAGACTCTTAGGATGCTGCGACAACGGACGAACTCGGTTGCTCTTGTTTGATTACATATGCAATGGGAGTTTGTTTGGATTGCTCCATGAGAAGAGATTGTTCTTGGATTGGGATGCAAGGTACAAGATCATGCTGGGAGCAGCTTATGGTTTGGAATATCTTCATCATGATTGTATCCCTCCAATTGTTCATAGGGATATCAAGGCTAATAACATCTTGGTTGGTCCACAATTTGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAACTTGTCAATTCATCAGAGTGTTCTCCAGCCTCTAACATAGTTGCAGGCTCTTATGGATACATAGCTCCTGAATATGGATACAGTTTGAGGATCACAGAGAAGAGTGATGTGTACAGTTACGGAGTGGTGCTTCTCGAGGTGTTAACAGGCATGGAGCCAACAGATAACAGGATTCCAGAGGGTGCTCACATTGTCACCTGGGTTAGCTATGAAATCAGAGTGAAGAAAAGAGACTTCACATCAATCCTTGACCAGAATCTGATACTACAGTGTGGAACAAGAATCCCTGAGATGCTTCAAGTTCTAGGAGTGGCTCTCCTCTGTGTGAATCCTTGCCCTGAAGAAAGGCCTACAATGAAGGATGTAACAGCAATGCTTAAGGAGATCAGACATGAAAACGACGAATTCGAGAAGCCGAATTTCCTCCATAAAGGCATGGTTGTAAATCCTAAAGCAGCTGTTCATTGTTCTAGTTTCTCTAGATCATGTCAGCCACTAATAGATTCACCATCTTCTTCTTCTTCATAG 3285 0.4244 MSRNALTLLILFLLNVLLLPPQISSLNQEGLSLLSWLSTFNSSNSATTTTSFFSSWDPTHENPCRWDYIKCSKQGFVSEIIVQSIDLHSSFPTQLLSFNHLKTLVISNGNLTGEIPSSLGNLTSLVTLDLSFNTLSGTIPDEIGQLYNLQWLSLNSNSLNGEIPTTIGNLTKLHQLALYDNQLSGMIPGEIGQLANLETLRAGGNPGIHGEIPMQISNCKALVFLGLADTGVSGEIPATIGELTNLQTLSVYTAHLTGHIPPEIHNCSSLENLFLYENQLSGMIPEELGSMQSLKRVLLWQNNLTGRIPESLGNCTDLKVIDFSLNSLAGELPLSLSNLLSLEELLLSDNNFTGEIPSYIGNFSRLKQLELDNNKFTGEIPTVLGKLKELTLFFAWQNQLHGSIPAELSGCKKLEAIDLSHNFLTGSIPRSLFHLENLTQLLLISNRLSGQIPPDIGSCKRLSRLRLGSNNFTGHIPPEIGLLNQLSFLELSDNMISGDIPSEIGNCANLEMLDLHGNALQGIIPSSVEFLVSLNVLDLSANQITGSIPGNLGKLASLNKLILSGNHITGLIPVSLALCMNLQLLDISNNMISGSIPNEIGRLQGLDILLNLSWNSLTGTIPDTFTNLSKLSILDLSHNKLSGTLSVLSSLDNLVSLNVSYNRFSGSLPDTKFFRDLPPAAFAGNPELCLNKCHLEGDRQEAKIVRNILIYTFLGVILTSIVVTLGVILALRIQGDTFGKNFEEAGELEWAFTPFQKLNFSINDIVTKLTDSNIVGNGCSGIVYRVETPMKQLIAVKKLWPIKSDEPPPERDQFAAEVQALGSIRHKNIVRLLGCCDNGRTRLLLFDYICNGSLFGLLHEKRLFLDWDARYKIMLGAAYGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLVNSSECSPASNIVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEVLTGMEPTDNRIPEGAHIVTWVSYEIRVKKRDFTSILDQNLILQCGTRIPEMLQVLGVALLCVNPCPEERPTMKDVTAMLKEIRHENDEFEKPNFLHKGMVVNPKAAVHCSSFSRSCQPLIDSPSSSSS 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120845g00016 1094 Pfam Leucine Rich Repeat 413 435 IPR001611 GO:0005515
Stsc120845g00016 1094 SMART LRR_sd22_2 146 172 - -
Stsc120845g00016 1094 SMART LRR_sd22_2 531 560 - -
Stsc120845g00016 1094 SMART LRR_sd22_2 411 440 - -
Stsc120845g00016 1094 SMART LRR_sd22_2 483 509 - -
Stsc120845g00016 1094 SMART LRR_sd22_2 122 145 - -
Stsc120845g00016 1094 SMART LRR_sd22_2 628 653 - -
Stsc120845g00016 1094 Pfam Protein kinase domain 771 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120845g00016 1094 Gene3D Transferase(Phosphotransferase) domain 1 849 1066 - -
Stsc120845g00016 1094 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 849 1063 - -
Stsc120845g00016 1094 Gene3D Ribonuclease Inhibitor 395 697 IPR032675 -
Stsc120845g00016 1094 Pfam Leucine rich repeat N-terminal domain 27 72 IPR013210 -
Stsc120845g00016 1094 ProSitePatterns Serine/Threonine protein kinases active-site signature. 892 904 IPR008271 GO:0004672|GO:0006468
Stsc120845g00016 1094 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 206 331 - -
Stsc120845g00016 1094 ProSiteProfiles Leucine-rich repeat profile. 581 603 IPR001611 GO:0005515
Stsc120845g00016 1094 SUPERFAMILY RNI-like 86 402 - -
Stsc120845g00016 1094 Gene3D Ribonuclease Inhibitor 26 190 IPR032675 -
Stsc120845g00016 1094 Gene3D Phosphorylase Kinase; domain 1 740 848 - -
Stsc120845g00016 1094 Gene3D Ribonuclease Inhibitor 191 393 IPR032675 -
Stsc120845g00016 1094 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 26 205 - -
Stsc120845g00016 1094 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 312 1047 - -
Stsc120845g00016 1094 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 413 697 - -
Stsc120845g00016 1094 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 745 848 - -
Stsc120845g00016 1094 SMART serkin_6 769 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120845g00016 1094 SMART LRR_typ_2 628 650 IPR003591 -
Stsc120845g00016 1094 SMART LRR_typ_2 291 315 IPR003591 -
Stsc120845g00016 1094 SMART LRR_typ_2 122 146 IPR003591 -
Stsc120845g00016 1094 SMART LRR_typ_2 170 194 IPR003591 -
Stsc120845g00016 1094 SMART LRR_typ_2 651 684 IPR003591 -
Stsc120845g00016 1094 SMART LRR_typ_2 555 578 IPR003591 -
Stsc120845g00016 1094 SMART LRR_typ_2 435 459 IPR003591 -
Stsc120845g00016 1094 SMART LRR_typ_2 339 363 IPR003591 -
Stsc120845g00016 1094 SMART LRR_typ_2 603 627 IPR003591 -
Stsc120845g00016 1094 SMART LRR_typ_2 531 554 IPR003591 -
Stsc120845g00016 1094 SMART LRR_typ_2 483 507 IPR003591 -
Stsc120845g00016 1094 ProSiteProfiles Protein kinase domain profile. 769 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120845g00016 1094 SUPERFAMILY Protein kinase-like (PK-like) 759 1045 IPR011009 -
Stsc120845g00016 1094 ProSitePatterns Protein kinases ATP-binding region signature. 775 803 IPR017441 GO:0005524
Stsc120845g00016 1094 Pfam Leucine rich repeat 610 664 IPR001611 GO:0005515
Stsc120845g00016 1094 Pfam Leucine rich repeat 509 568 IPR001611 GO:0005515
Stsc120845g00016 1094 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Stsc120845g00016 1094 PRINTS Leucine-rich repeat signature 125 138 - -
Stsc120845g00016 1094 PRINTS Leucine-rich repeat signature 628 641 - -
Stsc120845g00016 1094 ProSiteProfiles Leucine-rich repeat profile. 630 652 IPR001611 GO:0005515
Stsc120845g00016 1094 SUPERFAMILY RNI-like 321 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120845g00016 Stsc-Chr120845 65224 68614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120845g00016 25 1076 Receptor kinase-like Gene Family AT5G56040 47.597 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc120845g00016 Pkinase 6.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120845g00016 - - gmx:100807225 1687.16