Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120844g00044 ATGAATCATCGAGCTATGGATGAACACATGATGCTCATATCTCAGCTATACCCTGCTGCTGCTGCTGGTGGTGGTAGTGGTGCATCATACACTCAAATAATTCCTCAACAAGGGGAGAACAAGAAAGCAAGAAGGAGGCGTAACAAGAAGAAGAAAGGAGGAGAGAATGGAGGTGGAGAAGGAGGGAACAAGAAGAGGAAGCTGAGTGAGGAGCAAGTGAATCTTCTTGAGATGAACTTTGGAAACGAACACAAGCTTGAGTCGGAACGGAAGGACAAGCTTGCTTTGGAGCTTGGTTTGGATCCGAGGCAAGTGGCCGTGTGGTTTCAGAACAGAAGAGCTCGCTGGAAGAACAAGAAACTAGAGGAGGAGTACTCCAATCTCAAAAGAGCACATGAAACCACTTTAATCGATAAATGCCGCCTTGAAACCGAGGTGTTGAAGCTTAAGGAGCAATTGTGTGAGGCAAAAGAGGAGATTCAGCGATTACAAGACAGCAGAGTAGTCCCAAGCAACAGTACCAGTTCATCCCAATCTCAATCACAATCACAGTCACATTCAATGGAAATGATGGACCCACCATTTTTTGGAGACTTTGGAGTTGAACCATATGATGATTATGTGTTCTATGTTCCTGAGACTCATTACACTAATGGCATGGAGTGGGTTAATAATTTATACATGTAG 687 0.4425 MNHRAMDEHMMLISQLYPAAAAGGGSGASYTQIIPQQGENKKARRRRNKKKKGGENGGGEGGNKKRKLSEEQVNLLEMNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKRAHETTLIDKCRLETEVLKLKEQLCEAKEEIQRLQDSRVVPSNSTSSSQSQSQSQSHSMEMMDPPFFGDFGVEPYDDYVFYVPETHYTNGMEWVNNLYM 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120844g00044 228 MobiDBLite consensus disorder prediction 164 189 - -
Stsc120844g00044 228 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 183 IPR045224 GO:0003700
Stsc120844g00044 228 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Stsc120844g00044 228 SMART HOX_1 62 123 IPR001356 GO:0003677
Stsc120844g00044 228 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Stsc120844g00044 228 Coils Coil 111 138 - -
Stsc120844g00044 228 MobiDBLite consensus disorder prediction 53 68 - -
Stsc120844g00044 228 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Stsc120844g00044 228 MobiDBLite consensus disorder prediction 165 189 - -
Stsc120844g00044 228 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Stsc120844g00044 228 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Stsc120844g00044 228 MobiDBLite consensus disorder prediction 24 68 - -
Stsc120844g00044 228 CDD homeodomain 66 120 IPR001356 GO:0003677
Stsc120844g00044 228 Gene3D - 55 127 - -
Stsc120844g00044 228 Coils Coil 146 166 - -
Stsc120844g00044 228 SUPERFAMILY Homeodomain-like 63 127 IPR009057 -
Stsc120844g00044 228 FunFam homeobox-leucine zipper protein ATHB-40 58 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120844g00044 Stsc-Chr120844 265871 267742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120844g00044 1 228 Homeobox Transcription Factor Family AT4G36740 52.766 1.65e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc120844g00044 Homeodomain 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120844g00044 K09338 - gmx:100809616 265.774