Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120844g00039 ATGAGAGTTCCCGTTTCGTCATCATCCCCACAGGCCAACAATACAACAACATCAAACCCAAAACCGGTTGAAACCCTCTCCACAAATAATCCAAGCATTCCAAACAACACAAGCACGCTGTGCTACGAGCCCACATCGGTGCTGGACCTGTGCCGGAGCCCCACCCCTGAGAAGCCAGCAGGCCTGGTGGCTAATAATAATAACAACTCACAGCAAGAGTGTGTGGAGGACCAGCTGGAGGACCATGTTCTGCACAATCTTGATTGGGACTCCATCATGAAGGACCTTGGCTTCCACGAAGACTCAAACCCACCCTTATTCAAGACCATGCTTCACCCAACCACCACCACCACCCTCCCTAATGTCCCTGACTTCCCTCCTTCCCACGACCCTTCCTCCTTCGATCCACACTCCGAATTCCCAGACATACATACCATGCCTGCTTACAACTACGCCAACGCCAACGCCACCCTTGACCACCTCCTCCACGATCCATCCACTAATTCTACCGCCACCGGCTTCGATTTCATAGAGGAGCTCATCCGCGCTGCCGATTGCTTCGATACTAACCACCTCCACGTCGCTCACGTGATATTGGAGCGGCTCAATCAACGCCTCCGATCCCCTGCTGGTGCCAAGCCTCTCCACCGCGCCGCCTTCTACTTCAAGGAAGCTCTCCAAGGCCTCCTTTCCGGTTCCAACCGCACTCCAAGACTCTCCTCTCTCGTTGAGATCGTCCACTGCATCAGAACATTCAAGGCCTTCTCTGGAATCTCGCCGATCCCGATGTTCTCCATCTTCACCACCAATCAGGCGCTCCTTGAGGCCTTTCATGGCTCCTCCTTCATGCACGTCGTTGATTTTGATATTGGATTAGGGATCCAGTATGCTTCGCTCATGAAGGAGATCGCAGAGAAGGCTGACTCCTTGAAACACGGATCGCCGCTTCTGCGTATCACCGCCGTTGTTCCCGAAGAGTACGCCGTCGAGAGCGCGCTCATTCGGGAGAATCTCAGCCAGTTCGCGCACGAGCTCAGGATCCGCGTCCAGGTCGACTTTTTGCTGCTCCGCACCTTCGAGACGCTGTCGTTTAAGGCCGTCAAGTTCGTCGACGGCGAGAAAACCGCTGTTCTTCTCTCGCCGGCGATATTCCGACGGCTCGGATCCGCTGGGAACACTGCTGCGTTCCTGGCGGACGTTCGGAGGGTTTCGCCGAGCGTGGTGGTGTTCGTGGACGGAGAGGGGTGGACGGAAGCGGCGGCAGCGGCGTCGTTCCGGCGCGGAGTGGTGAGCAGCCTAGAGTTCTACTCGATGATGCTGGAGTCGCTGGACGCGTCGATGGTTGCGGGAGGGGAGTGGGTAAGGAGGATCGAGATGCTGCTGCTGCGCCCGAAGATACTTGCGGCAGTGGAGGGAGCTGGGCGGAGGGTTCCTCCGTGGAGGGAAGCGTTCTACGGTGCCGGAATGAGGCCGGTGCAGTTAAGCCAGTTCGCAGATTTTCAGGCGGAGTGCTTGCTGGCTAAGGTGCAAATCAGGGGCTTCCACGTGGCAAAACGGCAGGCTGAGCTGGTGCTCTTCTGGCATGAGAGGGCCATGGTTGCTACATCAGCTTGGCGCTGTTAG 1623 0.5699 MRVPVSSSSPQANNTTTSNPKPVETLSTNNPSIPNNTSTLCYEPTSVLDLCRSPTPEKPAGLVANNNNNSQQECVEDQLEDHVLHNLDWDSIMKDLGFHEDSNPPLFKTMLHPTTTTTLPNVPDFPPSHDPSSFDPHSEFPDIHTMPAYNYANANATLDHLLHDPSTNSTATGFDFIEELIRAADCFDTNHLHVAHVILERLNQRLRSPAGAKPLHRAAFYFKEALQGLLSGSNRTPRLSSLVEIVHCIRTFKAFSGISPIPMFSIFTTNQALLEAFHGSSFMHVVDFDIGLGIQYASLMKEIAEKADSLKHGSPLLRITAVVPEEYAVESALIRENLSQFAHELRIRVQVDFLLLRTFETLSFKAVKFVDGEKTAVLLSPAIFRRLGSAGNTAAFLADVRRVSPSVVVFVDGEGWTEAAAAASFRRGVVSSLEFYSMMLESLDASMVAGGEWVRRIEMLLLRPKILAAVEGAGRRVPPWREAFYGAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATSAWRC 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120844g00039 540 ProSiteProfiles GRAS family profile. 167 539 IPR005202 -
Stsc120844g00039 540 MobiDBLite consensus disorder prediction 1 38 - -
Stsc120844g00039 540 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 156 534 IPR005202 -
Stsc120844g00039 540 Pfam GRAS domain family 177 539 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120844g00039 Stsc-Chr120844 240068 242456 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120844g00039 79 539 GRAS Transcription Factor Family AT4G36710 55.858 1.56e-168 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc120844g00039 GRAS 4.7e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120844g00039 - - aip:107640116 828.55