Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120844g00036 ATGCCGGTTGATTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGTGTCTCTTCCTCTGGCAATCAGATAGTTCCTCTCAAATCAGCCACCAAGAAAAAGCGTAACCTACCAGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCACCGAAGACTCTATTGGCGACGAATCGATTCGTGTGCGAAATCTGCAACAAGGGTTTCCAGAGGGATCAGAATCTTCAGCTCCATCGAAGGGGTCACAACCTTCCATGGAAGCTGAGGCAGAGGTCGAGTAAGGAGGTGAAGAAGAGGGTGTACGTGTGCCCTGAGCCGACGTGCGTTCACCACGATCCTTCACGCGCACTCGGTGACCTCACCGGAATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCTAAGAAATACGCTGTTCAATCCGATTGGAAGGCTCACTCTAAGATTTGCGGCACTAGAGAGTACAAATGCGATTGTGGAACTTTGTTCTCAAGGAGGGATAGCTTCATCACGCATAGAGCTTTTTGTGATGCGTTGGCAGAGGAAAGTGCGAGATCTCAGCCTAATTCACAAACTACACAGTCTCAGATTGGTGTTAAGGTTACTTCTGAATCAGATTCTAAGGCTGTTATTGGTGATTCTTCGTCTCCTCAGGAGACACCTCCACCTCCACCTCCACCACAGCTTCCTGCTCCTGCTACTGCTGCTGCTCCTCCGCCGCCTCCTCCTCCTCCGGTTCATCCGCCAGCTCCATCACTCCCGGTTACTACTGCTGCTGCTGCTACTACTACTCAGCAAAACAGTGTTGTTGTGCCACCGGTTTTGCAGACTCAGAATCCAGAGTTGCCAGAAAATTCCCCACAAATCATAGAGGAGCCACAAGCTAACACTGCTCTGAATGGGAGCTGTAGCAGCAGCACTAGCTCAACTAGCAATGGTGGAACTAGCAGCAGTGTATTTGCAAGCTTGTTTGCTTCATCAACTGCATCTGGTAACCTGCAATCCCAAACACCACCGGCATTTACCGACCTCGTTAGGGCCATGGGGCACCCTGATCATCCAACAGATCTCCCAGGGCCATCATCCTCGGAGCCCATTTCTCTGTGCCTTGCCACTAATCATGGCTCTTCAATATTTGGAACAGGAGGGCAGGAACGCCGCCAGTATGCACCACCACCACAGCCAACCATGTCCGCCACTGCTTTGCTGCAGAAAGCAGCTCAAATGGGTGCGGCTGCAACCAATGCTTCACTGCTTCGTGGTTTAGGTATAGTGTCCTCTTCTTCATCTTCACCAGCTCAGCAAGATAGCTTACAATGGGGTCAGCAGCCAGCCGAACCAGAGAGTGCCTCAGTTCCTGCAGGGCTTGGACTTGGGCTATCTTTTGACAGCGGCTCTGGACTAAAGGAATTAATGATGGGGACTCCTTCCATGTTTGGACCAAAGCATACCACCCTTGATTTTCTAGGATTGGGGATGGCTGCCGGGGGCACCCCTGGTGGAGGTTTGTCAGCACTCATCACATCTATTGGTGGTGGTTTGGATGTTAGTGCTGCGGCGGCAGCATCTTTTGGAAATGGAGAGTTCTCTGGCAAAGACATTGGGAGGAGCTCATGA 1644 0.5122 MPVDLDNVSTASGEASVSSSGNQIVPLKSATKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPNSQTTQSQIGVKVTSESDSKAVIGDSSSPQETPPPPPPPQLPAPATAAAPPPPPPPPVHPPAPSLPVTTAAAATTTQQNSVVVPPVLQTQNPELPENSPQIIEEPQANTALNGSCSSSTSSTSNGGTSSSVFASLFASSTASGNLQSQTPPAFTDLVRAMGHPDHPTDLPGPSSSEPISLCLATNHGSSIFGTGGQERRQYAPPPQPTMSATALLQKAAQMGAAATNASLLRGLGIVSSSSSSPAQQDSLQWGQQPAEPESASVPAGLGLGLSFDSGSGLKELMMGTPSMFGPKHTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVSAAAAASFGNGEFSGKDIGRSS 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120844g00036 547 MobiDBLite consensus disorder prediction 191 272 - -
Stsc120844g00036 547 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Stsc120844g00036 547 MobiDBLite consensus disorder prediction 192 225 - -
Stsc120844g00036 547 FunFam protein indeterminate-domain 12-like 40 108 - -
Stsc120844g00036 547 SMART c2h2final6 61 83 IPR013087 -
Stsc120844g00036 547 SMART c2h2final6 102 132 IPR013087 -
Stsc120844g00036 547 SMART c2h2final6 137 157 IPR013087 -
Stsc120844g00036 547 MobiDBLite consensus disorder prediction 9 29 - -
Stsc120844g00036 547 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Stsc120844g00036 547 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 506 IPR031140 -
Stsc120844g00036 547 MobiDBLite consensus disorder prediction 226 261 - -
Stsc120844g00036 547 Gene3D Classic Zinc Finger 115 195 - -
Stsc120844g00036 547 MobiDBLite consensus disorder prediction 434 455 - -
Stsc120844g00036 547 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Stsc120844g00036 547 MobiDBLite consensus disorder prediction 434 465 - -
Stsc120844g00036 547 Gene3D Classic Zinc Finger 41 107 - -
Stsc120844g00036 547 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Stsc120844g00036 547 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120844g00036 Stsc-Chr120844 221253 224933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120844g00036 1 547 IDZ Gene Family AT5G66730 57.500 0.0 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc120844g00036 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120844g00036 K25869 - gmx:100806404 753.051