Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120844g00022 ATGCCTAATAGATTTCCTGACGATGCCACGCCGGACAATGCCACGCCGGATAACGCCACACCTGATGATGCCACACCTGATGATGCTGATGGATCAGACCAGAAAAAGGACTCCTCCTCCTCACCACCATCATCATCATCATCGTCATCATCTTCGTCGTCGTCATCATCACCACCATCGTCATCAAAATCTCCACCGCCTCCTCCGACTCCGACTGATAGTAGTACTACCAATACTCCTACTCCTTCTTCGGATGGAAATTCTGGCACATCAGGACATAGCAAACAATTAGCACCGCCGTCTAAAGATTCAAGTTCTAATAACAACTCAGGAGCTACGGGAGTATACGTTGCTTTAGGAGTCCTTGGGGTTTTAGTCTTCTTCGTGGCCATTGTTTGCATTCGAAAGATGTGCAAAAAGAAGAAACAAAAGATGTACTATTATGCTGGTGGAGATAAAGCTAATGATCAAATGAATAGGAATAATAACTACAGCGTTAATAATCAAAATCATGTTGTGAGAATGCAAAATGGTGGTGATAGTAGTGGTTGGGGTTCATCACCGACTCCTCTGATGATGAACAGCGCGGAAATGAGCTCCACTTACTCCAGTGGGTCTCATATGCCTCCTCCACTTTCACTGGCTCTTAACAGTGGCACCTTCACCTATGAAGAACTTGCACAGGCCACAAGCAACTTTGCGGAGTCTAACATGATAGGACAAGGTGGATTCGGTTATGTGTTCAAAGGTGTGTTGCCTAATGGTAAGGAAGTGGCGGTTAAGACCCTCAAGACCGGTAGCGGCCAAGGCGAGCGGGAGTTCCAGGCTGAGATTGAGATCATCAGCCGTGTTCATCATCGCCATCTTGTTTCACTTGTTGGTTACTGCATTGCTGGTGGACAGAGAATGTTGGTGTATGAATTCATCCCTAATGGCACCTTGGAACATCACCTTCATTCCAAGGGTCAGCCTACCATGGATTGGCCTACTAGAATGCGGATTGCCTTGGGAACCGCCAAGGGACTTGCTTATCTTCATGAAGATTGTCATCCTCGCATTATCCATCGTGACATCAAAGCCGCCAATGTCCTTCTTGATGATAGCTTCGAAGCAAAGGTGGCTGATTTTGGATTGGCTAAGTTGACTACTGATAATAACACTCATGTATCAACTCGTGTCATGGGAACATTCGGGTACTTAGCTCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGATGTATTCTCGTTTGGAGTGATGCTATTAGAAATCCTAAGTGGGAAGCGCCCTGTGGATCTCTCAGGTGCCATGGATGATAGCTTAGTGGACTGGGCTCGACCACTACTAACACGCGGATTGGAAGAAGACGGCAACTTTGGAGAGTTGGTAGATCCATTTTTGGAAGGAAACTTCAACAAACAAGAAATGACAAGGATGGCAGCTTGCGCTTCTTCCAGCATCCGTCACTCAGCGAAGAAGCGTCCAAGAATGAGTCAGATTGTAAGGGCGTTGGAAGGAGATGTGTCATTGGATGACTTGAAGGATATGGGGAATAAGCCTCCCTCTGGCTCTAGTTACGCCTCTTCAACTGGTTACAACCCTTCAACTGCAAGCTCTGGCTATGACACAATGCAATACAATGCTGATATGGCAAAGTTCAGACAAGCAGTGTTTGCAAGCCAGGAATATAGTATGAGTAGTGGTGAACAAAGCTTAAGCAAATAA 1731 0.4593 MPNRFPDDATPDNATPDNATPDDATPDDADGSDQKKDSSSSPPSSSSSSSSSSSSSSPPSSSKSPPPPPTPTDSSTTNTPTPSSDGNSGTSGHSKQLAPPSKDSSSNNNSGATGVYVALGVLGVLVFFVAIVCIRKMCKKKKQKMYYYAGGDKANDQMNRNNNYSVNNQNHVVRMQNGGDSSGWGSSPTPLMMNSAEMSSTYSSGSHMPPPLSLALNSGTFTYEELAQATSNFAESNMIGQGGFGYVFKGVLPNGKEVAVKTLKTGSGQGEREFQAEIEIISRVHHRHLVSLVGYCIAGGQRMLVYEFIPNGTLEHHLHSKGQPTMDWPTRMRIALGTAKGLAYLHEDCHPRIIHRDIKAANVLLDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEILSGKRPVDLSGAMDDSLVDWARPLLTRGLEEDGNFGELVDPFLEGNFNKQEMTRMAACASSSIRHSAKKRPRMSQIVRALEGDVSLDDLKDMGNKPPSGSSYASSTGYNPSTASSGYDTMQYNADMAKFRQAVFASQEYSMSSGEQSLSK 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120844g00022 576 MobiDBLite consensus disorder prediction 1 108 - -
Stsc120844g00022 576 SUPERFAMILY Protein kinase-like (PK-like) 207 506 IPR011009 -
Stsc120844g00022 576 ProSiteProfiles Protein kinase domain profile. 233 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120844g00022 576 MobiDBLite consensus disorder prediction 513 543 - -
Stsc120844g00022 576 Gene3D Phosphorylase Kinase; domain 1 198 308 - -
Stsc120844g00022 576 Pfam Protein tyrosine and serine/threonine kinase 237 505 IPR001245 GO:0004672|GO:0006468
Stsc120844g00022 576 MobiDBLite consensus disorder prediction 36 59 - -
Stsc120844g00022 576 MobiDBLite consensus disorder prediction 76 108 - -
Stsc120844g00022 576 Gene3D Transferase(Phosphotransferase) domain 1 309 518 - -
Stsc120844g00022 576 FunFam proline-rich receptor-like protein kinase PERK1 211 308 - -
Stsc120844g00022 576 MobiDBLite consensus disorder prediction 523 543 - -
Stsc120844g00022 576 FunFam Proline-rich receptor-like protein kinase PERK1 309 517 - -
Stsc120844g00022 576 SMART serkin_6 233 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120844g00022 576 MobiDBLite consensus disorder prediction 60 75 - -
Stsc120844g00022 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 353 365 IPR008271 GO:0004672|GO:0006468
Stsc120844g00022 576 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 124 558 IPR047117 -
Stsc120844g00022 576 ProSitePatterns Protein kinases ATP-binding region signature. 239 261 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120844g00022 Stsc-Chr120844 159477 162549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120844g00022 53 574 Trihelix Transcription Factor Family AT1G70460 46.992 5.15e-149 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc120844g00022 PK_Tyr_Ser-Thr 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120844g00022 - - gmx:100777163 644.425